Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e06
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    32   0.075
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    29   0.70 
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   8.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.6  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 33/105 (31%), Positives = 46/105 (43%)
 Frame = +1

Query: 277 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLVLNLGTHGFYPFPGTFR 456
           V+C     F    + +   GF    +  KF A+ WAV E +LLV  L    F P P  FR
Sbjct: 145 VNCQSTTKFIFGELPVFNSGFSVSSSDVKFRAVQWAVGEAILLVCVL--LNFIP-PKWFR 201

Query: 457 RQYNMYVEYTSIIAEPRCYPGILHVYLVDILNFLINLIWLRIVVS 591
                Y+   S+               V +L+F++N+IWL I VS
Sbjct: 202 -----YIFRVSV--------------AVILLDFVLNMIWLPIAVS 227


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -3

Query: 384 RPGYSAEL-IVINVALEAISDNSNCQQMKRYIQDTRHQMQISDDETYSA*FDSTAHVS 214
           RP Y+  L I+ N  +E          M ++IQD    + + D   YS  F    H S
Sbjct: 252 RPAYAKTLEIIANKGIEPFYRGELTNSMVKFIQDNGGIVTVEDFGNYSTVFADALHTS 309


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 482 THRLSQSPDAIPVFSTCTWLTS 547
           ++RLS  PD IP  S   W T+
Sbjct: 604 SYRLSVIPDGIPAMSVEVWATN 625


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 157 GELRAVLSIGNVLTMVLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFHLLTVAIVTD 333
           G  +AVLS  ++  +V    +MCC  +L  +    A L + S +  I   L  + + TD
Sbjct: 187 GPGKAVLSDDSICEIVETGLSMCCQSRLSQVLRYSAELSMTSILEKIFERLKYIDVKTD 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,816
Number of Sequences: 5004
Number of extensions: 59772
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)