Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e02
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    27   2.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.1  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    26   5.4  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    25   7.2  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   9.5  

>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 98  KNRTPTEHVLIEKGKKILMPCPVLIPFKVVSLYLKILLHQNCNIKG--N*MRNDAAGIV 268
           +N   T H+  E+ K + +    L   +V+ L  ++L HQ+CN +G    + ++A GI+
Sbjct: 293 QNLEKTAHIACEQSKALRILVSQLRE-EVICLKNQLLAHQDCNCEGIRQYLSSEAQGIM 350


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 571  TMYRSMKDFLLREFFVH*AFVGTDDS 494
            T Y   +DFLL E FV    +GT DS
Sbjct: 1385 TSYLIRQDFLLNEDFVGTELIGTTDS 1410


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 170 IPFKVVSLYLKILLHQNCNIK--GN*MRNDAAGIVKNGSG*NRMP 298
           I ++  S+Y+ I+   N  I   GN +R+D +G+VK  +  + MP
Sbjct: 173 IKYRKNSIYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMP 217


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 189 LTTLNGISTGHGIKIFFPFSISTCSVGVLF 100
           + TL G+  GH   + FP  ++    GVLF
Sbjct: 92  IMTLLGVLLGHAAPLLFPRKLTDILGGVLF 121


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 147 IFFPFSISTCSVGVLFFTA*N*IIDIH-FCTIICFLLTSGVVVY 19
           + FPF ++TC++   F+T  N  + I  F  ++  +   GV V+
Sbjct: 168 VTFPFELTTCAITFTFWTDVNCAVWISIFLVVVIGINLFGVRVF 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,066
Number of Sequences: 5004
Number of extensions: 40091
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)