Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e02
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0544 + 19309026-19310105                                         31   1.1  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    30   1.4  
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220...    29   4.2  
01_06_0104 + 26486155-26486328,26486903-26486995                       28   5.6  
03_05_0161 + 21400580-21401695                                         28   7.4  
01_01_0463 - 3424951-3425065,3425191-3425258,3425362-3425586,342...    28   7.4  
11_01_0311 + 2322511-2323527                                           27   9.8  
03_02_0539 - 9329572-9330729,9330988-9331041                           27   9.8  

>07_03_0544 + 19309026-19310105
          Length = 359

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 465 CKQHYSCGRTLSSVPTKAQCTKNSRKR 545
           CK++++ G TL +VP    C KN R R
Sbjct: 79  CKRYWTRGGTLRNVPVGGGCRKNKRSR 105


>02_05_0717 +
           31190626-31191234,31191954-31192394,31192699-31192802,
           31193000-31194384,31194508-31194548,31195065-31195133,
           31195335-31195435,31195747-31195825,31195939-31196037,
           31196119-31196187,31197609-31197658,31197749-31197925,
           31198045-31198152,31198224-31198290
          Length = 1132

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 160 PSTNTVQSGEPVSENIVTSKLQYQRQLNAERCRRYRQKWKRLKS 291
           PST +   G P S ++ +   + ++ + AER R   ++W+R +S
Sbjct: 69  PSTPSEAEGSPFSSSVGSGAEERRQSVAAERRRSQEEEWERRRS 112


>07_01_0308 +
           2203597-2203774,2203886-2204066,2204141-2204282,
           2204371-2204440,2204546-2204715
          Length = 246

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 78  IDIHFCTIICFLLTSGVVV 22
           +D HF TI CF+L  G+VV
Sbjct: 89  LDYHFLTIACFVLVLGMVV 107


>01_06_0104 + 26486155-26486328,26486903-26486995
          Length = 88

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 183 TLNGISTGHGIKIFFPFSISTCSVGV 106
           T N  ++ H IKI  P++ S+C VGV
Sbjct: 27  TSNANTSRHSIKILDPYTASSCLVGV 52


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 465 CKQHYSCGRTLSSVPTKAQCTKNSRKRKS 551
           C+++++ G  L +VP    C KN R R +
Sbjct: 78  CRRYWTKGGALRNVPVGGGCRKNKRSRSA 106


>01_01_0463 -
           3424951-3425065,3425191-3425258,3425362-3425586,
           3425669-3425804,3425905-3426107,3426227-3426340,
           3426432-3426506,3426625-3426783,3426868-3427038,
           3427227-3427274,3427366-3427491,3427611-3427718,
           3427800-3427913,3428320-3428496
          Length = 612

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +2

Query: 86  FYAVKNRTPTEHVLIEKGKKILMPCPVLIPFKVVSL 193
           FY ++  T  + +++ +GK  ++P  +++PF+  S+
Sbjct: 484 FYKLEMATDVQLLILSEGKSNILPSDLIVPFRPSSV 519


>11_01_0311 + 2322511-2323527
          Length = 338

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 591 SSVMSHIQCIDR*RIFFCESSSCIEPSSVPTTACARRSSVVCISS 457
           SSV     CI    +   + ++C  PSS   + C+  SS    SS
Sbjct: 11  SSVRDFASCIGDGAVRVADVAACTAPSSTRVSTCSSSSSTTASSS 55


>03_02_0539 - 9329572-9330729,9330988-9331041
          Length = 403

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 465 CKQHYSCGRTLSSVPTKAQCTKNSRKRKS 551
           C+++++ G +L +VP    C +N R  KS
Sbjct: 121 CRRYWTRGGSLRNVPVGGGCRRNKRSGKS 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,797
Number of Sequences: 37544
Number of extensions: 237532
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)