Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte27e01
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 54 5e-11
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 33 0.056
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 28 1.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 2.8
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.8
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 6.4
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 26 6.4
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 8.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 8.4
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo... 25 8.4
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 54.0 bits (124), Expect(2) = 5e-11
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Frame = +1
Query: 220 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 399
+NPDV AFQR+++ E+ R + ER LRY+ +E+ + I+VPD P E E+
Sbjct: 15 LNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLPPSYESVLESSTIED 74
Query: 400 ILE---KWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGA 570
I+E + + + + E+ L YL+ E VL + + D N +
Sbjct: 75 IIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSKSGNTVDPLRNNYETS 134
Query: 571 DILPG 585
I G
Sbjct: 135 SIFSG 139
Score = 28.7 bits (61), Expect(2) = 5e-11
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 607 GVVRRSKSYHFEMMLWRVSRGNIYYRQATED 699
G++ K E +LWR RGN++ Q D
Sbjct: 178 GIIPTVKFQFLERILWRTLRGNLFIHQVRAD 208
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 32.7 bits (71), Expect = 0.056
Identities = 27/105 (25%), Positives = 45/105 (42%)
Frame = +1
Query: 190 YLIYIAREFQMNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKAL 369
+LI+ A Q++P+ +TEVC LR L +Y+ V KAL
Sbjct: 362 FLIFWAS--QLDPEFTDIFLGVLTEVCLDPSQPYTLR------LSGAMYIGSYVARAKAL 413
Query: 370 QPNEMIAYENILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQ 504
+ N + N++ +W EN +L+ L + + Y +NQ
Sbjct: 414 EKNTIQIIVNMMTRWVEAYLDQCEN--ELSDDLLSKHSVFYAINQ 456
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 331 IYVPDS-VQEPKALQPNEMIAYENILEKW---KNDITVMSENHTKLNKSYLELNEMLYVL 498
+Y+PD + P +P I ++ +K +ND + N+T+L + + LN + +
Sbjct: 348 LYIPDCLIGRPSEKKPKFKITGKDATKKIFGARNDYAFRASNNTELMRWWEALNTHIANV 407
Query: 499 NQIGPLLGDN 528
N I PL N
Sbjct: 408 NYIQPLSNAN 417
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 316 LLKDNIYVPDSVQEPKALQPN--EMIAYENILEKWKNDITVMSENHTKLNKSYLELNEML 489
LL D+ + + K +P+ E N+L +W + + + S ++ + K ++ +L
Sbjct: 164 LLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSISYAQTEKQEAKVTPLL 223
Query: 490 YVLNQIGPLLGDNDMRR 540
++N LL RR
Sbjct: 224 AIINMSLVLLSAFPTRR 240
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 423 VVLPLLKNILVSDHLVWLQRFWFLNAVWYINIIL*QLSFY 304
++ P++ + + +L W FW +N +W +I+ F+
Sbjct: 245 IIGPIIGDFITQSYLEWRWTFW-INMIWAAAVIVFVFIFF 283
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 37 YGFNLSINSSIFDIQ*NETIRDICYNGNYSKRLLHCLKIAIKTV 168
+ FN +N + DI+ + + YN N L H L+ ++K +
Sbjct: 1372 FSFNKDLNQQLLDIETSPSEHTQSYNLNLLDVLQHTLRDSLKDI 1415
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 460 KSYLELNEMLYVLNQIGPLLGD 525
+SYLE+N+ + +LNQ ++GD
Sbjct: 317 RSYLEINQRVALLNQRVEVIGD 338
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 539 AIQNFRI*EELIFYPVVISSSCRGSSVAARVTTLK*CYGGYREET-STIDKPQKINT 706
AI+N +I + P + +S + + +R+ +K Y GYRE T + + P++ +T
Sbjct: 202 AIENSKISSSYAYKPSFVLASSQLDASISRILDVKFLY-GYREPTLAILYSPEQTST 257
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = -2
Query: 168 YCFNCYLQTMQKTLRVISIITNISNCFVSLNIKY*TIYRKIKPVT 34
YC Y +K R + +TN FV + + + +Y + P++
Sbjct: 589 YCTAAYFVWQKKVERKLWYLTNSKLSFVPILVSFIILYNTMVPIS 633
>SPAP27G11.07c |||serine/threonine protein kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 238
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 247 RNYITEVCRCAEMERKL 297
R+YI E+C C E+E+KL
Sbjct: 110 RDYIREICEC-EIEKKL 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,952
Number of Sequences: 5004
Number of extensions: 67980
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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