Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte27e01
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 68 9e-12
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 56 3e-08
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 54 2e-07
08_01_0116 - 934801-934949,935745-935854,935930-936055,936439-93... 33 0.31
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 29 2.9
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 29 5.0
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 67.7 bits (158), Expect = 9e-12
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 21/178 (11%)
Frame = +1
Query: 220 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPN-EMIAYE 396
+N D FQR ++ +V RC+EM RKLR+ ++ K V SV+ A+QP+ ++ E
Sbjct: 48 LNEDKSPFQRIFVNQVKRCSEMSRKLRFFNDQINKAG--VKSSVR--PAMQPDIDLEELE 103
Query: 397 NILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRR------------ 540
L + +ND+ M+ N KL ++Y EL E VL++ G +L +
Sbjct: 104 AKLREHENDLLEMNTNSEKLLQTYNELLEFKMVLSKAGGILASSHNHAAPAERELDEHIY 163
Query: 541 DSKFPNLRGADILPGGHL--------IVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQA 690
D + + + G HL + G++ +SK+ FE ML+R +RGN+++ QA
Sbjct: 164 DKEMDDGNAYLLEQGVHLGASENSGVKFVSGIILKSKAMAFERMLFRATRGNMFFNQA 221
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 56.0 bits (129), Expect = 3e-08
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Frame = +1
Query: 220 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 399
+N D FQR Y ++ RC EM RKLR+ + ++ K I + E +L +++ E
Sbjct: 51 LNADKSPFQRTYAAQIKRCGEMARKLRFFKEQMSKAGISTSAQLTE-ISLDFDDL---EI 106
Query: 400 ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPL--------------LGDNDMR 537
L + + ++ ++ N+ KL ++Y EL E VL + G + N
Sbjct: 107 KLGELEAELAEVNANNEKLKRTYNELLEYSTVLQKAGEFFYSAQRSAAAQQREMEANQSG 166
Query: 538 RDSKFPNLRGADILPGGHLIV----MPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDK 702
S L D L V + G+V + K+ FE +L+R +RGNI+ RQ + D+
Sbjct: 167 ESSLESPLLEQDTLTDASKQVKLGSLSGLVPKEKAMAFERILFRATRGNIFLRQESVDE 225
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 53.6 bits (123), Expect = 2e-07
Identities = 45/161 (27%), Positives = 80/161 (49%)
Frame = +1
Query: 220 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 399
+N D FQR Y +++ RC EM RKLR+ ++ K I + +L+ +++ E
Sbjct: 50 LNADKSPFQRTYASQIKRCGEMARKLRFFREQMSKAAI-ATSTQFSGTSLEIDDL---EV 105
Query: 400 ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGADIL 579
L + + ++T ++ N+ KL ++Y EL E VL + +M D G+
Sbjct: 106 KLGELEVELTEVNANNDKLQRTYNELVEYNIVLQK--------EMVTDPSKQVKLGS--- 154
Query: 580 PGGHLIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDK 702
+ G+V + K+ FE +L+R +RGN++ RQ D+
Sbjct: 155 -------LSGLVPKEKAMAFERILFRATRGNMFLRQEPVDE 188
>08_01_0116 -
934801-934949,935745-935854,935930-936055,936439-936526,
936638-936758,936848-936926,937093-937156,937240-937445,
937676-937715,937748-938009
Length = 414
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 610 VVRRSKSYHFEMMLWRV-SRGNIYYRQATEDKYSKTRSLA 726
VV +++S ++E W+ + GN Y+R AT Y+ TR LA
Sbjct: 283 VVDKNESKYYEPDHWKFGTEGNNYFRHATRQLYAVTRDLA 322
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/94 (27%), Positives = 43/94 (45%)
Frame = +1
Query: 325 DNIYVPDSVQEPKALQPNEMIAYENILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQ 504
D++ + +++ P L+ +IA + I W + V H LN SY E L +
Sbjct: 544 DSLALELNLEFPVRLENPHVIASDQI---WVGVVPVGPSGHP-LNSSY-RTRETLKYKQE 598
Query: 505 IGPLLGDNDMRRDSKFPNLRGADILPGGHLIVMP 606
+G +G R + PN+ A I+P G L+ P
Sbjct: 599 LGITIG-----RQLRTPNINFARIVPDGLLVFFP 627
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 433 MSENHTKLNKSYLELNEMLYVLNQIGPLLGDND--MRRDSKFPNLRGADILPGGHLIVMP 606
+S+NH + + + L E +L +I PL+ D +R + +LR I G +
Sbjct: 220 LSDNHQPMTRPVIRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVY 279
Query: 607 GVVRRSKSYHFEMMLWRV 660
+ Y EM WR+
Sbjct: 280 VCTMAERDYALEM--WRL 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,739,628
Number of Sequences: 37544
Number of extensions: 416734
Number of successful extensions: 981
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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