Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27e01
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   3.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/79 (20%), Positives = 32/79 (40%)
 Frame = +1

Query: 472 ELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGADILPGGHLIVMPGVVRRSKSYHFEMML 651
           EL +     N +  L   ND    ++F  L    +LP G +  M     R ++     +L
Sbjct: 54  ELYQKARTFNLVENLDNYNDKEAVNEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLL 113

Query: 652 WRVSRGNIYYRQATEDKYS 708
           +     +++Y  A   +++
Sbjct: 114 YSAKTFDVFYNTAVWARFN 132


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 338 YQTAFRNQKRCNQTR*SLTRIFLRSGRTTLR*CQKITRS 454
           Y+ AF+   RC+ +  S+TR  L S R +   C    RS
Sbjct: 323 YRNAFKETCRCSPSNPSITRTGLSSVRDSSIICGGNKRS 361


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/79 (20%), Positives = 32/79 (40%)
 Frame = +1

Query: 472 ELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGADILPGGHLIVMPGVVRRSKSYHFEMML 651
           EL +     N +  L   ND    ++F  L    +LP G +  M     R ++     +L
Sbjct: 54  ELYQKARTFNLVENLDNYNDKEAVNEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLL 113

Query: 652 WRVSRGNIYYRQATEDKYS 708
           +     +++Y  A   +++
Sbjct: 114 YSAKTFDVFYNTAVWARFN 132


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 160 KTVPFLSRIYYLIYIAREFQMNP-DVQ 237
           KTV + +R++ +I    EFQ+ P D+Q
Sbjct: 102 KTVKYSARMHAIIACQMEFQLYPMDIQ 128


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 127 SSNFHYNKYLELFRFTEYQILN 62
           S+N++YN Y   ++   Y I+N
Sbjct: 319 SNNYNYNNYNNNYKPLYYNIIN 340


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 578 RISAPLKFGNFESRRMSLSP 519
           +I AP+ +GNF  R + + P
Sbjct: 337 QIPAPVYYGNFPPRPIMVRP 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,766
Number of Sequences: 438
Number of extensions: 5275
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)