Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27d15
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 479 AAKWLRDSAETINAKANVVT 538
           A +WLRD+AE       ++T
Sbjct: 229 ALRWLRDNAEAFGGDPELIT 248


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 479 AAKWLRDSAETINAKANVVT 538
           A +WLRD+AE       ++T
Sbjct: 229 ALRWLRDNAEAFGGDPELIT 248


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 135 EIFSKPDTRTFLQDNNKET*IQHDC*VLYHRPTYVE 242
           +I S    +T   +NN +    ++C  LY+   Y+E
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNCKKLYYNINYIE 115


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 318  QPPDPPPTTSS 286
            QPP PPP  SS
Sbjct: 1354 QPPPPPPPPSS 1364


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 295 CWWRIGW 315
           CWW+I W
Sbjct: 489 CWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 295 CWWRIGW 315
           CWW+I W
Sbjct: 542 CWWKICW 548


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 491 LRDSAETINAKANVVTTKDGHVINYEYIVIAVGLKSDYNKIPG 619
           L++ ++TIN   ++  + DG   NY     +VG K ++  + G
Sbjct: 467 LKELSKTINFTYSLALSPDGQFGNYIIKNNSVGGKKEWTGLIG 509


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 275 YSCKLLVVGGGSGGCTVAAK 334
           Y   + V+GG S GCT   +
Sbjct: 132 YKVDVEVIGGASRGCTAVLR 151


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 275 YSCKLLVVGGGSGGCTVAAK 334
           Y   + V+GG S GCT   +
Sbjct: 132 YKVDVEVIGGASRGCTAVLR 151


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 620 SLEFYYNRS 594
           ++EFYYNRS
Sbjct: 638 AMEFYYNRS 646


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 620 SLEFYYNRS 594
           ++EFYYNRS
Sbjct: 676 AMEFYYNRS 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,150
Number of Sequences: 438
Number of extensions: 3944
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)