Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27d11
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.73 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.73 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 702 NKLPKNHLDSKKKFNDTYNNST 637
           N++  N LD+++  +D YNN+T
Sbjct: 185 NEIKLNSLDTEQILDDMYNNNT 206


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 457 RKYKTCSIYIYRYLLITINFSFQNLFKSQKSASICSNFSYINIL*NTFYLCAET 618
           +KY  C    Y  +   I    + LF +      C + SY+++L   FYL A++
Sbjct: 212 KKYYPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYLSVL--AFYLPADS 263


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 84  YYNTIFLNYK*KSDNGSAWE 143
           + NTIF N    SD G  WE
Sbjct: 86  FKNTIFTNVASTSDGGIFWE 105


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 314 WKAYMQECEGFLNGTLDYSKLRGD 385
           W A +    GFL G L YS+  GD
Sbjct: 440 WPALVPLALGFLAGELTYSQEIGD 463



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 348 KNPSHSCI*AFQSISVYGTFSTINILSTSSVTI 250
           KN +  C+   QS+ V    +TIN  +TS +++
Sbjct: 817 KNINDHCVTTEQSVVVTNVTTTINTPTTSVISM 849


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 328 HISFPIYFSVRHLFHDQYI 272
           H   PIY S  HL H Q +
Sbjct: 64  HRDLPIYQSHHHLHHHQVL 82


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 494 IYL-LQLTLVFRIYLKAKKVPPYVLILVILTSYRIHSIY 607
           +YL   LTL FR +        +  + +++T+  +HS Y
Sbjct: 260 LYLPFHLTLSFRDFRDRTTEQQHKAMFLVVTAQPVHSAY 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,975
Number of Sequences: 438
Number of extensions: 4041
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)