Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27d10
         (205 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   4.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    19   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   5.9  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              19   7.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   7.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 155 VIFY*RNQYEKFI 193
           +IF  RN YE FI
Sbjct: 414 IIFIPRNIYENFI 426


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 159 ITFYLENSQKVYCYTVQI 106
           ITFY+   +K   YTV +
Sbjct: 223 ITFYIIIRRKTLFYTVNL 240


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 17  RFSQRRTYKNKLTFKKMVE 73
           R  ++R+YKN+ +++K  E
Sbjct: 276 REREQRSYKNENSYRKYRE 294


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 136 TKSLLLHSPNYT 101
           TK  L+H+ NYT
Sbjct: 370 TKVQLIHAGNYT 381


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = -2

Query: 159 ITFYLENSQKVYCYTVQITHFSKLY*QRTSTIFLN 55
           +  Y+E + K + +  +  +F++   +  + IFLN
Sbjct: 59  VQLYIECAMKKFSFVDKDGNFNEHVSREIAKIFLN 93


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 12  ICASHSAVPTKISLHLK 62
           IC    AVP +++ H +
Sbjct: 96  ICGKTFAVPARLTRHYR 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,600
Number of Sequences: 438
Number of extensions: 753
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)