Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27d07
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    28   1.0  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   1.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.2  
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    25   7.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   9.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.7  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 475 RWSSTIASTNPHPSDPKTSAPKVRKSQVRDSIPAIKTQCTTI 350
           RW+   AS N  P D   ++P++ K  VR ++     +C  +
Sbjct: 517 RWNRICASHNMDPEDVNNASPELLKEFVRLNVDPDTIECNRV 558


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 507 HLTFLAVKTGVVGRRLSPRRTPIPPTLKPAL 415
           H   L +K   +G  L P +TP+PP L+  L
Sbjct: 65  HSVILNIKHPELGEPLKPYQTPLPPELEAPL 95


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 519  NDCGHLTFLAVK---TGVVGRRLSPRRTPIPPTLKPALPRCGNLK*EIQSLPLKRNVLQ 352
            N CG L+   +    TG +G  +  R+  + PT+K  + +   L   +  LPL +NVL+
Sbjct: 950  NQCGSLSLEELSDMSTGELGDLIHNRK--MGPTVKKFISKLPLLNINVDLLPLTKNVLR 1006


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 182 NIKISENLGGYKLNAAVEQYKAFLYHNVQ 268
           N+KI+E++ G+KL       KAF Y   +
Sbjct: 78  NVKITEDMIGHKLGEFAPTRKAFHYRQTK 106


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 639 AGTLHLPYFTTRYLNVACAFSNASKRRNCFRFTSSVF*NMNDCGHLTFLA 490
           A +L L    T ++N     SNA  RRNCF+    +  N +D   L+ +A
Sbjct: 312 ASSLILSSVLTSFVN-GLKSSNAEVRRNCFQTFKDLSANASDNESLSRVA 360


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 609  TRYLNVACAFSNASKRRNCFRF 544
            TRYLN A A  N   RR C +F
Sbjct: 3381 TRYLNDALAL-NCETRRRCLKF 3401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,709
Number of Sequences: 5004
Number of extensions: 50290
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)