Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27b18
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.64 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.64 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 469 PYHYITVLGAYGYVTMAISVETRTPTVF 386
           PY  + ++G YG   +   V T  P VF
Sbjct: 297 PYATVALIGVYGNRELLTPVSTMLPAVF 324


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 469 PYHYITVLGAYGYVTMAISVETRTPTVF 386
           PY  + ++G YG   +   V T  P VF
Sbjct: 297 PYATVALIGVYGNRELLTPVSTMLPAVF 324


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 164 ITKKMYFTSASSRLLLYDCLTWELKKSYGC----YEGLLRDISWSDDSKYILQVN 316
           +T  +Y++  SSR L Y      +K  YG     Y+G ++DI  ++    I+  N
Sbjct: 262 MTNNLYYSPLSSRSLYYVNTKPFMKSEYGANNVQYQG-VQDIFNTESIAKIMSKN 315


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +2

Query: 332 EILSAADHDVRSLQHLSL 385
           ++LS +D+D+ +++H +L
Sbjct: 499 QVLSMSDYDISNIEHEAL 516


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = -1

Query: 438 TAMLRWPSRWKLAHQLSFNDKCCKLRTS*SAADNISTKPFEFTCNMYLLSS 286
           T +++ P  +++   L FND+  +   + +  D    K      + YLL++
Sbjct: 152 TKLMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAA 202


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = -1

Query: 438 TAMLRWPSRWKLAHQLSFNDKCCKLRTS*SAADNISTKPFEFTCNMYLLSS 286
           T +++ P  +++   L FND+  +   + +  D    K      + YLL++
Sbjct: 152 TKLMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAA 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,348
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)