Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27b15
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 570 HMGLGHVSTYGTRSATAQPSLDNREI 647
           H G+  VS YGT      P L  +E+
Sbjct: 10  HFGVDDVSLYGTPKEEPGPGLPGQEV 35


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 570 HMGLGHVSTYGTRSATAQPSLDNREI 647
           H G+  VS YGT      P L  +E+
Sbjct: 10  HFGVDDVSLYGTPKEEPGPGLPGQEV 35


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 570 HMGLGHVSTYGTRSATAQPSLDNREI 647
           H G+  VS YGT      P L  +E+
Sbjct: 10  HFGVDDVSLYGTPKEEPGPGLPGQEV 35


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 253  LPCGVHLTRPVPLNLKSPTSNLRRRITVTRAARSTE 360
            LPC +  + P P+ L++  ++ R  I +TR    TE
Sbjct: 1104 LPCVLRASTPAPVVLEAVHASRRVLIVLTRNFLLTE 1139


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 638 IVQRRLRSCTSCTVS 594
           I  RRLRS T+C VS
Sbjct: 63  ITTRRLRSVTNCFVS 77


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 579 TPCDERLSMVCRRGVAALSDHSKPAVCLRRCYAKAR 472
           T C+   +   +  VA+ +  SK   C R  Y K R
Sbjct: 67  TKCEGFCNSQVQPSVASTTGFSKECYCCRESYLKER 102


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 579 TPCDERLSMVCRRGVAALSDHSKPAVCLRRCYAKAR 472
           T C+   +   +  VA+ +  SK   C R  Y K R
Sbjct: 67  TKCEGFCNSQVQPSVASTTGFSKECYCCRESYLKER 102


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 61  LQPTNATPTQVKAITRKGRCWNYLTKNG 144
           LQ     P  + +   +GRC +YL  +G
Sbjct: 38  LQYPGCVPKPIPSYACRGRCSSYLQVSG 65


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 84   NTGQSYHEERPVLELFNKERSSPPLDAQRQAQTSSYYNQD 203
            +T   Y+E    LE+ +++   PP    R  QTS+  ++D
Sbjct: 966  STQSEYYE----LEVKDQKNGKPPSVVSRSTQTSANNDKD 1001


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,763
Number of Sequences: 438
Number of extensions: 5596
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)