Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27b05
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    29   0.034
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.1  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 0.034
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 SLIDQPFSLRVFGVEWIFIYCSCHGF 310
           S +  PFSL +FG  WIF   SC G+
Sbjct: 51  SKVPGPFSLPIFGTRWIF---SCIGY 73


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/76 (17%), Positives = 33/76 (43%)
 Frame = +3

Query: 210 PPPVPNEEVSLINHLVLEYLEWNGYLYTAAVMASEANTVEKRTRADLCAEVGVKDDEKSS 389
           P P+ + E + + ++VL+ ++ +GY     V       +        CA+ G      + 
Sbjct: 192 PQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTG-SGKTAAF 250

Query: 390 TLPLLSNVVTAYTDRI 437
            +P+++ ++    D +
Sbjct: 251 AVPIINTLLERSVDLV 266



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 210 PPPVPNEEVSLINH 251
           PP +PN+E SL  +
Sbjct: 155 PPELPNDEKSLFEN 168


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = +3

Query: 177 LQERQNSTQKNPPPVPNEEVSLINHLVLEYLEWNGYLYTAAVMASEANTVEKRTRADLCA 356
           L + Q +T  N      +EVSL+  ++L   ++  +L TAA      N  E +      A
Sbjct: 85  LVQPQGTTFSNSISQLRKEVSLLYRILLGAKDYQTFLKTAAWARVHVN--EGQFLKAFVA 142

Query: 357 EVGVKDDEKSSTLP 398
            V  + D +S   P
Sbjct: 143 AVLTRQDTQSVIFP 156


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 168 TEILQERQNSTQKNPPPVPNEEVSLINHLVLEYLEWNGYLYTAAVMASEANTVE 329
           TE+LQE  N  + +    P  E++ IN + + Y +   Y+YT  + ++ A T++
Sbjct: 11  TELLQELTNDCRYDKMTRPPGEINSINPINV-YTK--AYIYT--IKSNMAKTLQ 59



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 291 YINIHSTPNTLRL 253
           Y+ +HS P+TL +
Sbjct: 380 YLTVHSFPSTLNI 392


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 180 QERQNSTQKNPPPVPNEEVSLIN 248
           +E Q   +KN   + N+EVS+ N
Sbjct: 164 EEEQTINRKNSDYLDNQEVSMEN 186


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 340 EQTCVQKSGS 369
           EQTCV K GS
Sbjct: 160 EQTCVMKFGS 169


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 93  TSPSQKTIYSHSF*NNNMFQYN 28
           +S S KTI++++  NNN +  N
Sbjct: 316 SSLSNKTIHNNNNYNNNNYNNN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,959
Number of Sequences: 438
Number of extensions: 3102
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)