Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27a16
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.28 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.28 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.65 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 44  VSLNNKVLYYAV*IDI*YDFIRFLMVTKFYLFSENP*WKLTVLIIGVLIPI 196
           +++  K L+Y V I I    I FL V  FYL S++   +   L I +LI +
Sbjct: 238 ITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDS--GEKVTLSISILISL 286


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 44  VSLNNKVLYYAV*IDI*YDFIRFLMVTKFYLFSENP*WKLTVLIIGVLIPI 196
           +++  K L+Y V I I    I FL V  FYL S++   +   L I +LI +
Sbjct: 238 ITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDS--GEKVTLSISILISL 286


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 44  VSLNNKVLYYAV*IDI*YDFIRFLMVTKFYLFSEN 148
           ++L  K L+Y V + I    I FL V  FYL S++
Sbjct: 230 ITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDS 264


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 41  FVSLNNKVLYYAV*IDI*YDFIRFLMVTKFYLFSE 145
           ++ +  K L+Y V + +    I FL V  FYL +E
Sbjct: 226 YIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAE 260



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 112 FNGDQILFIL*ESIMEVDSVDNWCTNT 192
           FNGDQ+   L  +   VD  D W + T
Sbjct: 174 FNGDQVSLALYNNKNFVDLSDYWKSGT 200


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 44  VSLNNKVLYYAV*IDI*YDFIRFLMVTKFYLFSEN 148
           +++  K L+Y V + I    I FL V  FYL S++
Sbjct: 234 ITMRRKTLFYTVNLIIPCMGISFLTVLVFYLPSDS 268


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 44  VSLNNKVLYYAV*IDI*YDFIRFLMVTKFYLFSEN 148
           +++  K L+Y V + I    I FL V  FYL S++
Sbjct: 243 ITMRRKTLFYTVNLIIPCVGITFLTVLVFYLPSDS 277


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 35  FVFVSLNNKVLYYAV*IDI*YDFIRFLMVTKFYL 136
           F  ++L  K L+Y V + +    I +L V  FYL
Sbjct: 226 FFNITLRRKTLFYTVNLIVPCVSISYLSVLAFYL 259


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 411 RSSSAVTCCSG 443
           RSSSA T CSG
Sbjct: 284 RSSSASTTCSG 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,647
Number of Sequences: 438
Number of extensions: 2724
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)