Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27a13
         (200 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   0.80 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   0.80 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   1.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   5.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   7.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    18   9.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    18   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    18   9.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 57  TKR*NLLVMKYHKXLWNGY 113
           TKR  + V+KYH  L N Y
Sbjct: 907 TKRRTMKVVKYHLFLTNLY 925


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 57   TKR*NLLVMKYHKXLWNGY 113
            TKR  + V+KYH  L N Y
Sbjct: 945  TKRRTMKVVKYHLFLTNLY 963


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 191 QYNXGHGTXVSHYPXAELCLED 126
           QY   HG  +SH   + + +ED
Sbjct: 472 QYVTVHGDVISHVNISHVMVED 493



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 89  PQXFMEWLLAMGXPQDKVP 145
           P   ++W  A G P + VP
Sbjct: 58  PPLNIDWSTADGHPVNDVP 76


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 191 QYNXGHGTXVSHYPXAELCLED 126
           QY   HG  +SH   + + +ED
Sbjct: 472 QYVTVHGDVISHVNISHVMVED 493



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 89  PQXFMEWLLAMGXPQDKVP 145
           P   ++W  A G P + VP
Sbjct: 58  PPLNIDWSTADGHPVNDVP 76


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = -2

Query: 106 FHKXLWYFITNKFHLFVTHXINSXQQNYEV 17
           + + +W  ++NK  +++   I+S + NY +
Sbjct: 493 YDQNVWV-LSNKLAMYLYGSIDSSKINYRI 521


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = -2

Query: 103 HKXLWYFITNKFHLFVTHXINSXQQNY 23
           H   +  I N+FH+      N    NY
Sbjct: 475 HDDAFIGIVNQFHILQFITKNGTSNNY 501


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 83  EVPQXFMEW 109
           EVPQ  +EW
Sbjct: 179 EVPQINLEW 187


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 4/5 (80%), Positives = 4/5 (80%)
 Frame = +3

Query: 102 WNGYW 116
           WN YW
Sbjct: 336 WNSYW 340


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 4/5 (80%), Positives = 4/5 (80%)
 Frame = +3

Query: 102 WNGYW 116
           WN YW
Sbjct: 336 WNSYW 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,333
Number of Sequences: 438
Number of extensions: 514
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2659293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)