Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte27a11
         (214 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   1.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   1.7  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   2.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   2.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   2.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   3.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   3.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           19   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               19   6.7  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 77 ICSCTSVGTVFNVGSLSRTRT 15
          + SC   G +F + S  RTRT
Sbjct: 13 VSSCVIFGVLFVLFSFLRTRT 33


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 77 ICSCTSVGTVFNVGSLSRTRT 15
          + SC   G +F + S  RTRT
Sbjct: 13 VSSCVIFGVLFVLFSFLRTRT 33


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 54  TNGCARTNLX---DGKYYDDTIEAATHFSSYQF*QIY 155
           TN  + T L    D K+YD    +A   SSY   ++Y
Sbjct: 79  TNTASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMY 115


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 54  TNGCARTNLX---DGKYYDDTIEAATHFSSYQF*QIY 155
           TN  + T L    D K+YD    +A   SSY   ++Y
Sbjct: 84  TNTASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMY 120


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 54  TNGCARTNLX---DGKYYDDTIEAATHFSSYQF*QIY 155
           TN  + T L    D K+YD    +A   SSY   ++Y
Sbjct: 84  TNTASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMY 120


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 57  NGCARTNLXDGKYYDD 104
           NG   T+L DG Y+ +
Sbjct: 507 NGEVATSLSDGSYFGE 522


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 57  NGCARTNLXDGKYYDD 104
           NG   T+L DG Y+ +
Sbjct: 475 NGEVATSLSDGSYFGE 490


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -3

Query: 125 MCCGFDGVVIVFAIXKICSCT 63
           MCCG         + + C+CT
Sbjct: 116 MCCGRGYKTQEVTVVERCACT 136


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 133 LEKCVAASMVSS 98
           L KC+AAS V S
Sbjct: 468 LYKCIAASKVGS 479



 Score = 19.4 bits (38), Expect = 5.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 193  YDFWTVLST 167
            YDFW   ST
Sbjct: 1248 YDFWVTAST 1256


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 70  EQILXMANTMTTPSKPQHIFQVISSNKST 156
           ++++ MAN        + + + I++NKST
Sbjct: 97  DKLVEMANRKNISIDVKMLSECINANKST 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,862
Number of Sequences: 438
Number of extensions: 779
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)