Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p18
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853...    30   1.5  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    30   2.0  
06_03_0886 + 25685340-25685813                                         29   4.5  
05_01_0013 - 85732-86829                                               28   6.0  
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65...    28   6.0  
07_03_0194 + 14979995-14980222                                         28   7.9  

>02_04_0191 -
           20783143-20784365,20784453-20784597,20784977-20785345,
           20786164-20786250,20786405-20786603,20786733-20786818
          Length = 702

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
 Frame = +1

Query: 196 KPVGINKHFQMACIWEKLSNSVTKEISTQDIWKHLGSLYDFTMLDEAEPIPFPNHEITFC 375
           K VG  K      +  + S  +T     Q +W+HL   ++F    E   +P  +     C
Sbjct: 44  KQVGAGKGIDWRALVRRTSTGITSAREYQMLWRHLAYGHEFVESVEPASLPLDDGSDLEC 103

Query: 376 ------LPENEFGALMKQKSKEVLVS---EETEGTRKDS-ISALATKTRK 495
                  P NE  A     +K ++     E+T G R +S  +AL T   K
Sbjct: 104 EIEIVPAPGNEALAEATSFAKTIITGSSREQTSGQRVNSEAAALNTPNEK 153


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = +1

Query: 421 EVLVSE---ETEGTRKDSISALATKTRKESGSSHASTDTPSIKSEKEYXXXXXXXXXNAS 591
           E LVSE   ET+   KDS +A AT   + S        T ++K              N S
Sbjct: 168 EALVSEIRKETQSKHKDS-AAAATAAARSSSQESDGRSTTAVKDPIARAAVSDDAMSNCS 226

Query: 592 GPRDGSSGR 618
           G   GS GR
Sbjct: 227 GGGGGSGGR 235


>06_03_0886 + 25685340-25685813
          Length = 157

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 458 FRVP-SVSSLTRTSFDFCFIKAPNSF 384
           FR+P  VS+  RTS  FCF   P SF
Sbjct: 113 FRIPVPVSATWRTSICFCFTGGPTSF 138


>05_01_0013 - 85732-86829
          Length = 365

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 307 LYDFTMLDEAEPIPFPNHEITFCLPENEFGALMKQKSKEVLVSEETEGTR 456
           L D     EA P  F  H     LP N+F ++ +QK K V+ S     +R
Sbjct: 88  LGDAERQQEAAPAEF--HVFLNDLPSNDFNSVFRQKQKLVVPSNNANSSR 135


>03_01_0082 +
           653041-653137,653219-653496,653596-653689,653804-653886,
           654027-654247,654395-654533,654628-654710,654824-655036,
           655099-655494,655587-655758,656085-656276,656363-656569,
           656661-656753,656957-657156,657329-657838,658114-658184,
           658322-658963,659057-659207,659425-659665
          Length = 1360

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 296 CFHISW-VDISLVTEFDNFSHI-QAIWKCLFIPTGLWLAIA*NNCISISTSHFKASSC 129
           C    W +D  L+ +F    HI + IW+CL+ P+ L LA A  +  +I   H   SSC
Sbjct: 313 CSCCIWAMDGKLIKKFRE--HIGRGIWRCLYDPSTLLLATAGFDS-AIKVHHLYNSSC 367


>07_03_0194 + 14979995-14980222
          Length = 75

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 235 IWEKLSNSVTKEISTQDIWKHLGSLYDFTMLDEAEPIPFPNH 360
           +W K+S ++    +  ++  H   L D   L EA  +PFP +
Sbjct: 27  LWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARRVPFPKY 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.126    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,960,196
Number of Sequences: 37544
Number of extensions: 342167
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)