Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p18
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.22 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.2  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   6.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 204 WYK*TLPNGLYMGEIIEFSYQRDINPRYMETLRQFI*FYDVRRSRTYTVSQSRNYVLF 377
           +Y   L +GLY  +  +FS     NP+Y E   Q+    D+  ++++    S+N VLF
Sbjct: 269 YYSPLLSHGLYYVDTEQFS-----NPQYEENNVQYEGSQDILNTQSFGKVVSKNGVLF 321


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 166 SPYLRPILKRRPALFPVLL 110
           SPY R +LK  P   PV++
Sbjct: 54  SPYFRELLKSTPCKHPVIV 72


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 418 KEVLVSEETEGTRKDSISALATKTRKESGSSHASTDTP 531
           K+VL ++E   +  DS+         E   S +ST+TP
Sbjct: 200 KDVLATDERSFSEHDSVMLGEISPHHEYYDSKSSTETP 237


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 347 RFPITKLRSVCPKMNLA 397
           +F  T+  SVC ++NLA
Sbjct: 26  KFKTTRYLSVCERLNLA 42


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 311 YKLPKCFHISWVDISLVTEFDNFSHIQAIWKCLFIPTGL 195
           ++L K    S   I L+ E +NF +      C++  TG+
Sbjct: 43  HELKKLRDSSEARIKLINEEENFRNYGCFLACIWQQTGV 81



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 226 MACIWEKLSNSVTKEISTQDI 288
           +ACIW++       E+ST +I
Sbjct: 72  LACIWQQTGVMNGSELSTYNI 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.126    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,477
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)