Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26p14
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.34
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.4
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.1
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.2
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T... 25 7.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.6
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 24 9.6
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 24 9.6
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 24 9.6
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c... 24 9.6
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.34
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 214 MTTPIMTSNQSASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSII 387
M+TP SN S SRTPS++ W I L+ + + SP + + SP +HS++
Sbjct: 279 MSTP--NSNHSRSRTPSSKKRTRWG-EEIIDLSKRRAVSPSIYYDLDKKCSP-IHSVM 332
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 2.4
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +1
Query: 217 TTPIMTSNQSASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSIIRPR 396
+TPI +S S TP +T I S ++ S +P+ + S+P S +
Sbjct: 2505 STPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNS 2564
Query: 397 RHPTTSLQPRRAINP 441
P TSL + P
Sbjct: 2565 STPITSLTALNSSTP 2579
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 369 STSFDNPPSTSSDNQPATSSGNQPSS 446
S+S + STS D+QP+TSS + PSS
Sbjct: 56 SSSSSSSISTSHDSQPSTSS-SSPSS 80
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 369 STSFDNPPSTSSDNQPATSSGN 434
STS D+ PSTSS + +TS+ +
Sbjct: 64 STSHDSQPSTSSSSPSSTSTSS 85
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 363 QPSTSFDNPPSTSSDNQPATS 425
QPSTS +P STS+ + TS
Sbjct: 70 QPSTSSSSPSSTSTSSSSGTS 90
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 369 STSFDNPPSTSSDNQPATSSGNQPSSK 449
STS N PSTS+ P S+ PS K
Sbjct: 205 STSHLNHPSTSNSPDPLYSASQPPSIK 231
>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 351 EEIVQPSTS-FDNPPSTSSDNQPATSSGNQPS 443
E I QP D S S D QP TSS N P+
Sbjct: 11 ENIEQPKQEPEDGNNSMSVDEQPETSSTNLPT 42
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 357 IVQPSTSFDNPPSTSSDNQPATSSGNQPSS 446
I S+S +P STSS ++SS + P+S
Sbjct: 273 ISSSSSSSSSPTSTSSTISSSSSSSSSPTS 302
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 381 DNPPSTSSDNQPATSSGN 434
+NPP+T +N P+ S+ N
Sbjct: 52 NNPPNTHRENNPSRSTDN 69
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 24.2 bits (50), Expect = 9.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +1
Query: 319 WSRSPVMQQSTKRLSSPQLH 378
WS P+++ S+ + PQ H
Sbjct: 50 WSNEPIIRHSSVKTDRPQFH 69
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 390 PSTSSDNQPATSSGNQPSS 446
PS++++ + TSSGNQ SS
Sbjct: 453 PSSAANKERQTSSGNQGSS 471
>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +1
Query: 259 PSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSIIRPRRHPTTSLQPRRAIN 438
P + G+ ++ + R+P +++ L P LH+ + P H ++QP +
Sbjct: 123 PKCYRSNGFTFDNFSAVFITGGRNPFVREM---LEDPLLHASLVPYIHSCRTIQPDEEVK 179
Query: 439 PHPKKK 456
+ K K
Sbjct: 180 DNRKIK 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,684
Number of Sequences: 5004
Number of extensions: 33542
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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