Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26p14
(456 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 28 3.7
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 28 3.7
AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical ... 28 3.7
Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 27 6.5
U64848-6|AAB04885.1| 208|Caenorhabditis elegans Hypothetical pr... 27 6.5
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 27 6.5
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 27 8.6
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 27 8.6
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 348 HEEIVQPSTSFDNPPSTSSDNQPATSSGNQPSSKKK 455
HE + QP DN PSTSS + T+ + KKK
Sbjct: 206 HEHLKQPKLESDN-PSTSSSFESQTNLNDSSIIKKK 240
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 348 HEEIVQPSTSFDNPPSTSSDNQPATSSGNQPSSKKK 455
HE + QP DN PSTSS + T+ + KKK
Sbjct: 206 HEHLKQPKLESDN-PSTSSSFESQTNLNDSSIIKKK 240
>AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical
protein R08F11.2 protein.
Length = 333
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 109 LIQLSKKIRSR*LCAPCRTEICVNCAAGTRCRLPMMTTPIMTSNQ 243
L++L+K + L CRT I + A G C + T PI+ S++
Sbjct: 134 LLELAKPTLAAFLFEGCRTYIFMGFAIGYGCYFAIFTPPIVFSSK 178
>Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical
protein Y53C12A.1 protein.
Length = 677
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 202 RLPMMT--TPIMTSNQSASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQL 375
++PMM TP+ T + + TP R + T+P WS V ++S L +PQ
Sbjct: 30 QIPMMMRETPLSTKRERQAITPRFRRPAPKMIKTMPPTRSIWS---VRKESVPLLVTPQG 86
Query: 376 HSIIRPRRHPTTSLQ 420
+ ++ T+ Q
Sbjct: 87 PKPLESPKYDHTNAQ 101
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical
protein ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 343 QSTKRLSSPQLHSIIRP--RRHPTTSLQPR 426
+ST+ L S Q+ + P ++HPTTS QPR
Sbjct: 2 ESTETLGSEQMGTDRDPGDQKHPTTSQQPR 31
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical
protein ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 343 QSTKRLSSPQLHSIIRP--RRHPTTSLQPR 426
+ST+ L S Q+ + P ++HPTTS QPR
Sbjct: 2 ESTETLGSEQMGTDRDPGDQKHPTTSQQPR 31
>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
protein C25D7.3 protein.
Length = 2150
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 345 VHEEIVQPSTSFDNPPST--SSDNQPAT 422
V EE+ P TSF PPS S +PAT
Sbjct: 178 VREELKDPETSFSKPPSVVHHSKIRPAT 205
>U64848-6|AAB04885.1| 208|Caenorhabditis elegans Hypothetical
protein C50E3.10 protein.
Length = 208
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 166 EICVNCAAGTRCRLPMM 216
E C NC +GT C PMM
Sbjct: 184 EACSNCPSGTSCTDPMM 200
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
protein protein.
Length = 2150
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 345 VHEEIVQPSTSFDNPPST--SSDNQPAT 422
V EE+ P TSF PPS S +PAT
Sbjct: 178 VREELKDPETSFSKPPSVVHHSKIRPAT 205
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 253 RTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSIIRPRRHPTTSLQPRR 429
R+PS +R R P+ + +SP ++S +R SP S R R P +PR+
Sbjct: 468 RSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSS--RSRSPPPPPRRPRQ 524
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 363 QPSTSFDNPPSTSSDNQPATSSGNQPS 443
QP F+ PP QP GNQP+
Sbjct: 99 QPQQGFNMPPMMVPPGQPPFYGGNQPN 125
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 363 QPSTSFDNPPSTSSDNQPATSSGNQPS 443
QP F+ PP QP GNQP+
Sbjct: 181 QPQQGFNMPPMMVPPGQPPFYGGNQPN 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,140,490
Number of Sequences: 27780
Number of extensions: 196640
Number of successful extensions: 847
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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