Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p10
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    28   0.66 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   8.1  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   8.1  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    25   8.1  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.1  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 61  VYTG*YSVD*ILPISIRFHHLKQVYGVVTVPASESCEHSLSHHKHYAY 204
           + TG Y++D +  I+  FH L  +  ++    +    HS SH   Y Y
Sbjct: 25  IITG-YAIDSLALIADSFHMLNDIVSLLVALWATRLAHSTSHEPKYTY 71


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 116 IISNRFMALSQFLRRNLVSIVFPTISITLIFLD 214
           + SNR     +FL RN    ++  +S+  IF++
Sbjct: 528 LASNRISVRIKFLERNCSECIYGVLSLPQIFIN 560


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 297 FGVPMTGFFIGKFLDDQETLRMTSFRD 377
           F VP++   +  +LDD+   R   FRD
Sbjct: 303 FNVPLSERIVECYLDDENRWRFLRFRD 329


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 382 DLSRKLVILKVSWSSRNLPMKNPVIGTPNQMKRGVMP 272
           D+ R   ILK    SR +    P I  P Q K G+MP
Sbjct: 136 DMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMP 172


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 97  PISIRFHHLKQVYGVVTVPA-SESCEHSLSHHKHY 198
           PIS+R    K VYG+ ++ + +E     LS   HY
Sbjct: 219 PISLRLSDGKNVYGIASIKSDTEHDSVQLSPSLHY 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,673
Number of Sequences: 5004
Number of extensions: 44321
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)