Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p10
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator prot...    31   0.45 
AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    27   7.3  
AL032652-9|CAB76748.1|  267|Caenorhabditis elegans Hypothetical ...    27   7.3  
AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator protein
           1.2 protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 231 LRVWFQSR-KISVMLMVGKTMLTRFRRRNCDNAINLFEMM 115
           L +W + R +IS ML+    +L+R  RRNC  A+ + EM+
Sbjct: 155 LGMWTELRNRISDMLLTYDKLLSRDDRRNCMGAMRMLEML 194


>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 240 LNRSKYKMAIFGITPRFIWFGVPMTGFFIGKFLDDQETLRMTSFRDKSALFG 395
           + + +Y + IF I    + FG+ + G + G  L     L +T  R  + +FG
Sbjct: 249 VEKEEYLVVIFFIVVTIVLFGLIVHGMYTGSLLRTVFNLVITYLRIIAGIFG 300


>AL032652-9|CAB76748.1|  267|Caenorhabditis elegans Hypothetical
           protein Y63D3A.11 protein.
          Length = 267

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 316 PVIGTPNQMKRGVMPKMAILYFDLLSFPLASVVPVK 209
           P++  P++  R  +      Y DLLSF L S  PVK
Sbjct: 7   PILRLPSKALRTTLQNFE--YLDLLSFSLVSPTPVK 40


>AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical
           protein ZC328.2 protein.
          Length = 386

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 226 SVVPVKKNKRNAYGGKDYAHKIPTQEL*QRHK 131
           S++   +N R      DY HK+  QEL QRH+
Sbjct: 333 SILGTHRNVRRCLSDGDY-HKMAAQELRQRHQ 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,528,766
Number of Sequences: 27780
Number of extensions: 244358
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)