Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p10
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   5.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 65  IPVSIQLIKYCLSAFASIISNRFMALSQFLRRNLVSIVFPTISITLI 205
           IPV + ++   LSA A ++     +L++F +R        ++ + L+
Sbjct: 179 IPVDVLVLTVTLSASAMVLGLSSYSLTEFQQRRAFLETRQSLEVQLV 225


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 71  VSIQLIKYCLSAFASIISNRFMALSQFLR 157
           V  ++ +YCL      ++N+F +LS+ LR
Sbjct: 597 VGKKMPRYCLFGHNVTLANKFESLSEPLR 625


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 479 YCTLNLFATNLHNYH 435
           YC+ N   T+++ YH
Sbjct: 45  YCSRNSLMTHIYTYH 59


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 94  LPISIRFHHLKQVYGVVTVPA 156
           +PI  R+   KQ+Y V  V A
Sbjct: 778 MPIPNRYREAKQIYKVGNVQA 798


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 178 LSHHKHYAYFS*LEPHSQVESSTDQS 255
           L+  +HYA ++ + PH+      + S
Sbjct: 767 LTEAEHYALYTAMAPHATASEFDEMS 792


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,178
Number of Sequences: 438
Number of extensions: 3086
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)