Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26p09
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.5
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.0
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 27 2.0
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.7
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 27 3.5
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 3.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 6.1
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 26 6.1
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 8.1
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 307 ADTPGAKVN-PLKDLTEIAPNEDPYVDCDPLVF 402
+D P + PLK++T + P +DP + + LV+
Sbjct: 304 SDKPDIRFELPLKNITSLLPKQDPLISTEILVY 336
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = +1
Query: 328 VNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEIRKALA 507
V L D+ EI + Y+ P K+ E + ++ K+ K + AL
Sbjct: 604 VGGLTDVAEIKGHRRTYIGAMPGKIVQALKKVQTENPLILIDEIDKVGKSHQGDPASALL 663
Query: 508 EAVEDICKCAYMDVYCNDLTAIDKVIDSCPA 600
E ++ A++D Y + + V+ C A
Sbjct: 664 ELLDSEQNSAFLDYYMDIPLDVSSVLFVCTA 694
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 376 YVDCDPLVFKII---KKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAVEDICKCAYMD 546
Y D ++K I K R P VEAR ++KL R+ + R VE++ K + D
Sbjct: 469 YADNTQQLYKNIVFGKVRFPRGLLSVEARDLIKLLLNRNPKHRLGAHGDVEEVMKHPFFD 528
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 304 AADTPGAKVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRD 483
A + G +V ++L EIA + DP+V ++ ++ + E + K +A++ +LKK
Sbjct: 676 AINIGGGRVISPEELEEIARR-----NVDPMVSELSERAAQERERKEQAKEAKRLKKLAK 730
Query: 484 AEIR 495
E R
Sbjct: 731 EEKR 734
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 340 KDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKV 444
K LT I + P +CDP V+KI++ ++ +
Sbjct: 6 KVLTIIKLLKAPLAECDPTVYKILESEKSRQKESI 40
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 633 FLVAYTLWFFKGWTTVYNLIDGS*IITIDIHIGTFANVF 517
FLV L G+ V+ + D + +I + H G FA+ +
Sbjct: 58 FLVPLLLTVIAGFVRVWKIADSNVVIWDEAHFGKFASYY 96
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 304 AADTPGAKVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQR 480
AA T A+VN ++D + E D D K K+R E + + + +K K KK++
Sbjct: 411 AAPTVEAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEK 469
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 619 ICHEESLSSLSSNATWDIEYTPP 687
+C+EES L + WDI P
Sbjct: 155 VCYEESKKYLQKQSNWDISVIAP 177
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -1
Query: 556 YNRHPYRHICKCLRRLRPGPFGF 488
+NRHP+ + C P F F
Sbjct: 85 FNRHPFTRVKSCFSSSSPSKFSF 107
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 310 LPHSTATPFWLAPVNL 263
L TP+WLAP+NL
Sbjct: 746 LEQQIPTPYWLAPLNL 761
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,262
Number of Sequences: 5004
Number of extensions: 55919
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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