Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p09
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    31   0.82 
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    31   0.82 
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    31   0.82 
AF040659-1|AAK39389.1|  332|Caenorhabditis elegans Hypothetical ...    31   1.1  
U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four) in...    30   1.9  
U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four) in...    30   1.9  
Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
           protein K07E12.1b protein.
          Length = 12268

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 256 LRPGLPVPAKMGWLWNAADTPGAKVNPLKDLTEIAPNEDPYVDC 387
           L PGLP        W AA  P  ++ P +++T+   N++  ++C
Sbjct: 599 LGPGLPSAPFTATTWLAAKPPVVQLEPSEEMTKEPSNDEMIIEC 642


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
           protein K07E12.1a protein.
          Length = 13100

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 256 LRPGLPVPAKMGWLWNAADTPGAKVNPLKDLTEIAPNEDPYVDC 387
           L PGLP        W AA  P  ++ P +++T+   N++  ++C
Sbjct: 662 LGPGLPSAPFTATTWLAAKPPVVQLEPSEEMTKEPSNDEMIIEC 705


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
           protein.
          Length = 13100

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 256 LRPGLPVPAKMGWLWNAADTPGAKVNPLKDLTEIAPNEDPYVDC 387
           L PGLP        W AA  P  ++ P +++T+   N++  ++C
Sbjct: 662 LGPGLPSAPFTATTWLAAKPPVVQLEPSEEMTKEPSNDEMIIEC 705


>AF040659-1|AAK39389.1|  332|Caenorhabditis elegans Hypothetical
           protein ZK484.3 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 391 PLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEA 513
           P+  +I  K  P     VE ++ +  KK+RDAE RKALA A
Sbjct: 80  PVKKEIKPKNKPAPVPVVEKKRTIPSKKERDAE-RKALAAA 119


>U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform a protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 411 QEAQPRGASESGSTEDGQAEEAARRRNPKGPGRSRRRHLQMC 536
           +E   R  SE+      QA++ +R R      R R RH++MC
Sbjct: 37  KEQNKRNQSENAKLRKKQADKDSRERREIESLRERERHVEMC 78


>U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform b protein.
          Length = 788

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 411 QEAQPRGASESGSTEDGQAEEAARRRNPKGPGRSRRRHLQMC 536
           +E   R  SE+      QA++ +R R      R R RH++MC
Sbjct: 42  KEQNKRNQSENAKLRKKQADKDSRERREIESLRERERHVEMC 83


>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 337 LKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEI 492
           LKD+ E++ N+D Y+  D    K       + ++K+E R   +L+  R  EI
Sbjct: 214 LKDMKELSENKDHYLPADLKKIKYTSDEIEKHKSKLEFRNQ-QLESSRTLEI 264


>U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical
           protein C17H11.2 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 238 HKPCMFLRPGLPVPAKMGWL 297
           +K C  LRPG+PVP  M  L
Sbjct: 155 YKKCQMLRPGVPVPRPMSLL 174


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 361 PNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQR-DAEIRKALAEAVE 519
           PN+   ++     FK  KK+  E +AK+EA+K  + +K+R   E ++ + EA +
Sbjct: 466 PNQFQEIERAQREFKNQKKQEEEIRAKLEAKKKAEQEKERAKREEQRRIEEAAK 519


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 361 PNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQR-DAEIRKALAEAVE 519
           PN+   ++     FK  KK+  E +AK+EA+K  + +K+R   E ++ + EA +
Sbjct: 466 PNQFQEIERAQREFKNQKKQEEEIRAKLEAKKKAEQEKERAKREEQRRIEEAAK 519


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 619 YTLVL*RLDNCL*PYRWQLDHYNRHPYRHICKCLRRLRP 503
           Y +    L++C+ P+ W   H+NR   +  C C +   P
Sbjct: 325 YIMFFGNLNSCMNPWLWF--HFNRKQLKRACPCRKSSEP 361


>AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical
           protein Y9D1A.1 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 429 GASESGSTEDGQAEEAARRRNPKGPGRSRRRHLQM 533
           G  ESG+ ++   E   RR  P+G GR  R    M
Sbjct: 196 GERESGNVDNDLIERRRRRIGPEGSGRKDRNETTM 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,502
Number of Sequences: 27780
Number of extensions: 332490
Number of successful extensions: 1080
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)