Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p07
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   4.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   6.4  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   6.4  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   8.5  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   8.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.5  

>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 161 VQQLCFIFPHLCTFTDIK-QLINHRYYTFKPE 69
           +QQ+C +F H  T  D + Q++   Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 681  HDLQEIIS--S*NYFKVRNVCFIFRPICN 601
            H L+ II+    N   +RNVC +F P  N
Sbjct: 1201 HHLRRIIAFEKVNKMNIRNVCIVFSPTLN 1229


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 166 VTSSSFVSFSHICALSQILNS**TTVITHLNLK-KH 62
           VT  SF  FSHI A+    N      I  LN+K KH
Sbjct: 112 VTMKSFTRFSHIVAIRSTGNCFSWDTIERLNIKPKH 147


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 120 ESAQMWENETKLLDVTSRVPPKSPLKK 200
           ES +  ENE   +DVT  VPP   L +
Sbjct: 25  ESEKEGENEVLEIDVTKPVPPSKKLMR 51


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 645 NNFS*KLFLVNHVCGISSYTPGMEMYGYSD 734
           N+ S K+++V   CG+ +  PG+E+Y  S+
Sbjct: 25  NSISDKIYVV---CGLDNENPGIEIYEISE 51


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 213  SFTEIFSVDFLEEPEKLRPAALFHFP 136
            SF  IFS  F EEPE  +    F  P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,506
Number of Sequences: 5004
Number of extensions: 54139
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)