Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p04
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0243 - 1783903-1784658                                           29   3.6  
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394...    29   3.6  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    29   4.8  
01_06_1261 - 35826513-35828941,35829201-35829294                       29   4.8  
08_01_0449 + 3965959-3966081,3966462-3966714,3967188-3967551,396...    28   8.4  
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214...    28   8.4  
07_03_1501 - 27005542-27005976,27006657-27008660                       28   8.4  

>07_01_0243 - 1783903-1784658
          Length = 251

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +3

Query: 453 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 572
           +C S++ P   P + PL+  +Q +L++LLL   + MM+L+
Sbjct: 59  SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95


>01_01_0538 -
           3938389-3939727,3939828-3940203,3940299-3940516,
           3940607-3940769,3940866-3941100,3941186-3941353
          Length = 832

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +2

Query: 287 VAKARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 466
           +A AR  ++   E     A L     TEL  +   L+ +N++ + AI D+  L+I  + R
Sbjct: 305 IATARDSLRQREEAKKKQAEL-----TELENEATELKQKNEEERVAIQDMEALLIKRRRR 359

Query: 467 VE 472
           VE
Sbjct: 360 VE 361


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 302 QHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRN 442
           + ++  ++ M++    A   +   + ++  L NEN+ LK  IDDL++
Sbjct: 421 EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKS 467


>01_06_1261 - 35826513-35828941,35829201-35829294
          Length = 840

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = +2

Query: 293 KARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 472
           K +Q  ++S E   S   LAG  + E+  KVISLE         I+ ++N    LQ R++
Sbjct: 311 KVKQKFESSSEA--SAVHLAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLD 367

Query: 473 TLE 481
           +LE
Sbjct: 368 SLE 370


>08_01_0449 +
           3965959-3966081,3966462-3966714,3967188-3967551,
           3967642-3967860,3969106-3969241,3970095-3970346,
           3970459-3970752
          Length = 546

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 177 FSCNKAAMLIIPKFRFELYLNTIKT 103
           + CN++A +++PK+  + YL  +KT
Sbjct: 319 YMCNESATVLLPKYMKDFYLYYLKT 343


>08_01_0264 -
           2142856-2143152,2143667-2143829,2143915-2143992,
           2144097-2144162,2144941-2145098
          Length = 253

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 389 SLENENKDLKKAIDDLRNLVISLQVRVETLE 481
           SLE++ K+LK   D+LR+    L+V  ETLE
Sbjct: 146 SLEDKIKELKAEKDELRDEKQKLKVEKETLE 176


>07_03_1501 - 27005542-27005976,27006657-27008660
          Length = 812

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +2

Query: 350 AGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQV 463
           AGVP+T+++ +++ +  E++  +  +  +R  VI L +
Sbjct: 707 AGVPDTDIAGRLVEILKEHRTPRVKVPRMRRFVIELAI 744


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,546
Number of Sequences: 37544
Number of extensions: 218448
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)