Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26p01
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    38   9e-05
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    38   9e-05
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 37.9 bits (84), Expect = 9e-05
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +1

Query: 475 KAFLAGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNGRIQPGMITIFANIIRQEQI 654
           K FLAG  +   S     P++ VK  LQ    H+       +   GMI  F  I +++  
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQV--QHISKQISEEQRYKGMIDCFVRIPKEQGF 69

Query: 655 VGLWRGMIPSVAR 693
           +  WRG + +V R
Sbjct: 70  LSYWRGNLANVIR 82



 Score = 25.0 bits (52), Expect = 0.69
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 487 AGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNGRIQPGMITIFANIIRQEQIVGLW 666
           +G  +G  S     PLD  +TRL       +      R   G+      I + + I GL+
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAAD----VGKAGGEREFTGLGNCLTKIFKADGITGLY 176

Query: 667 RGMIPSV 687
           RG   SV
Sbjct: 177 RGFGVSV 183


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 37.9 bits (84), Expect = 9e-05
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +1

Query: 475 KAFLAGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNGRIQPGMITIFANIIRQEQI 654
           K FLAG  +   S     P++ VK  LQ    H+       +   GMI  F  I +++  
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQV--QHISKQISEEQRYKGMIDCFVRIPKEQGF 69

Query: 655 VGLWRGMIPSVAR 693
           +  WRG + +V R
Sbjct: 70  LSYWRGNLANVIR 82



 Score = 25.0 bits (52), Expect = 0.69
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 487 AGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNGRIQPGMITIFANIIRQEQIVGLW 666
           +G  +G  S     PLD  +TRL       +      R   G+      I + + I GL+
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAAD----VGKAGGEREFTGLGNCLTKIFKADGITGLY 176

Query: 667 RGMIPSV 687
           RG   SV
Sbjct: 177 RGFGVSV 183


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 693 SGNGGYHPSPQSNDLLLTDYVS 628
           S  GG+HPS +S  L+L  + +
Sbjct: 568 SALGGWHPSDRSARLMLQPWAN 589


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 128 LSLIFVVLNSLTYSSQASWLKF 63
           LSL+ VVL   T   +  W K+
Sbjct: 10  LSLVSVVLLDTTQEEKLEWTKY 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,697
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)