Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26o21
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.90
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.8
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 8.4
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.90
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = -2
Query: 670 SRRTTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQAQRSFL 491
S ++ ++ S+ + P + S + SS+ F PS+ +S T S + + + L
Sbjct: 216 SSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAAL 275
Query: 490 HSVLKSTSSHCSLN 449
S+H SLN
Sbjct: 276 ALNASKASNHTSLN 289
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 661 TTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 524
T+ TN S +PT + ST + + T V T P T TS T
Sbjct: 268 TSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 313
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 661 TTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISN 515
TT T+ S + T TP+ + + +T + + + P T ++ TIS+
Sbjct: 529 TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISS 577
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 661 TTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTS 530
TT + + T T GST+ +STG + V T PSTVTS
Sbjct: 213 TTAVTVTATETYTVTATNGGSTI---TSTGASTVTSTQPSTVTS 253
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 658 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 524
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 863 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 907
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 658 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 524
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 907 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 951
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 658 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 524
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 951 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 995
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 658 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 524
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 995 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 1039
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 658 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 524
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 1039 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 1083
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 658 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 524
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 1083 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 1127
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 646 TNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 524
T + T T + A T +V +TG+TG + + +GT
Sbjct: 823 TTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 863
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 649 MTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPST-VTSGTISN 515
+T+ +A+ T PI S+ +V+SST T + ST +TS T+ N
Sbjct: 1644 ITSSTALNTSPPIT--SSTVVNSSTPITSSTVVNTSTPITSSTVVN 1687
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 361 RPSVRPPLPADGVLPVDF 308
RPSVRP + G +P+D+
Sbjct: 491 RPSVRPDISITGPIPIDW 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,882
Number of Sequences: 5004
Number of extensions: 41571
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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