Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26o21
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0175 - 1497700-1498459,1498546-1499939 31 1.2
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 30 1.6
07_03_0955 + 22867448-22868248 29 2.9
03_05_0483 - 24806984-24808324 29 3.8
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 29 3.8
07_01_0264 + 1970019-1970749,1970892-1971546 29 5.0
06_03_0743 + 24069752-24070483,24071890-24072345 29 5.0
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701... 29 5.0
10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128 28 6.6
07_03_0497 + 18777377-18777592,18777691-18778512 28 6.6
12_02_1181 - 26732439-26732528,26732883-26732963,26733104-267331... 28 8.7
05_05_0392 + 24629528-24630442 28 8.7
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 28 8.7
>08_01_0175 - 1497700-1498459,1498546-1499939
Length = 717
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -2
Query: 685 LALLKSRRTTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQA 506
+A+L+S ++ +PT P +A L SSTG T S+ TSG I++ +
Sbjct: 636 MAMLQSSGQLPVLPAKMPVPTYAPPVASVEGLFTSSTGMLSSSATQSSSTTSGYITHTSS 695
Query: 505 QRSFLHSVLKSTSS 464
+ S SS
Sbjct: 696 SSNTSTSAGSKDSS 709
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 707 RSSCFTPSCPAEKP--KNNANDDEHQRHADEDSNHR 606
R+ C PSC AEKP NNAN+ AD+D+ R
Sbjct: 260 RTKCNRPSCEAEKPFQTNNANESS----ADQDNQVR 291
>07_03_0955 + 22867448-22868248
Length = 266
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 616 PIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQAQRSFLH 488
P++AG+TV DS + +H+ P+ + S + AQ H
Sbjct: 8 PLVAGATVSSDSDSDSDDLHLLLPNLLPSAATAASDAQLHHFH 50
>03_05_0483 - 24806984-24808324
Length = 446
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -2
Query: 394 LPRLPRRERQVRPSVRPPLPADGVL 320
LPRLPRR+R+ P +R +PA G+L
Sbjct: 5 LPRLPRRQRRPGPELR--VPARGLL 27
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 481 LKSTSSHCSLNKQDSLMLAAWQYYCDCCDLPRLPRRERQVRP 356
L TS+ + K D ++ AW+++ + L +L R++ VRP
Sbjct: 195 LDRTSNFFFMEKVDMIIARAWRWFLEKTRLQKLFSRKKSVRP 236
>07_01_0264 + 1970019-1970749,1970892-1971546
Length = 461
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = -2
Query: 403 CCDLPRLPRRERQVRPSVRPPLPADGVLPVD----FHVASHVQPAP-ARAQDVGAGRGP 242
CC P + R V+ V PP A L V+ F A+ P P A+ G G GP
Sbjct: 51 CCATPSVASVGRDVKAPVSPPAGASVTLVVEQATRFATATTALPLPLAKIPAAGRGGGP 109
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 668 PKNNANDDEHQRHADEDSNHRGVNGPGRLINWFYGSTYNCSVDGDQRYHLELASA 504
P +DD H R D+D +H G + + G +CS + D+R A+A
Sbjct: 69 PSTTHDDDHHHRRHDQDHHHHHKQGQEKNSHG-GGGAASCSNNDDKRESPSAAAA 122
>01_06_0853 -
32468690-32468857,32469398-32469535,32469930-32470145,
32470280-32470356,32470483-32470549,32471264-32471866,
32471971-32472258
Length = 518
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 546 GAVICTPVKPVDESTRTVDPAMIGVLVGMA 635
GA TP +PV S R V+ I V++G+A
Sbjct: 41 GAAAATPPEPVSPSARLVEDFFIVVVIGIA 70
>10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128
Length = 458
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = -2
Query: 712 VEDRP----VSRHLALLK-SRRTTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITA 548
VE+RP V+ L +L+ SR++ Q NIS G+ + ++++ + ++A
Sbjct: 387 VEERPDMKEVAEQLVILRRSRKSRQGNYNISPQQFEEMSTEGTPLSLETAVSVSSSVLSA 446
Query: 547 PSTVTSGTISN 515
PST + SN
Sbjct: 447 PSTPANNDFSN 457
>07_03_0497 + 18777377-18777592,18777691-18778512
Length = 345
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 616 PIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQAQRSFLHSVLKSTS 467
P STV V S+ G+ +H T +T +GT + FLH+ +T+
Sbjct: 3 PFPENSTVCVGSTDGWLALHRTDAATTAAGT--KTKRHTFFLHNPFTATT 50
>12_02_1181 -
26732439-26732528,26732883-26732963,26733104-26733163,
26733372-26733451,26733815-26733866,26733987-26734124,
26734203-26734466,26735895-26735952,26736153-26736262,
26736385-26736432,26736812-26736823
Length = 330
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 346 PPLPADGVLPVDFHVASHVQPAPARAQDVGAGRGP 242
P + GV PV+ V S +P P + Q +GAG P
Sbjct: 207 PDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFVP 241
>05_05_0392 + 24629528-24630442
Length = 304
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/57 (36%), Positives = 24/57 (42%)
Frame = -2
Query: 391 PRLPRRERQVRPSVRPPLPADGVLPVDFHVASHVQPAPARAQDVGAGRGPLRRPFEP 221
P PRRE RP+ R P PA P A+ A GA GP R+P P
Sbjct: 176 PPPPRREPGERPTRRSPSPATKRPPDQRRTAASAGAA------AGAASGPQRKPPVP 226
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 469 TLTSRPSARMNVALASSRWYRWSPSTEQLYVLP*NQLMSLP 591
T T+ +A A A+ RW+RW P + P L SLP
Sbjct: 54 TTTTTAAATATSATAACRWFRWPPPAQ----APVRGLCSLP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,285,387
Number of Sequences: 37544
Number of extensions: 304290
Number of successful extensions: 1250
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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