Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o19
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    28   1.2  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   2.0  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   3.6  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   6.2  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   6.2  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   8.2  

>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 401 PSTTDFTFVKGNPSIAGRFEIVANEAQSAL 312
           PS +   FVK  PSI+ +F  +A E +S L
Sbjct: 443 PSCSSHAFVKAIPSISSKFSQLAEEYESQL 472


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 424 VPYFYMSPLDFSARDLTKNSRATVL--VSLEETKFCDQNNYDPEDPRCTRLMLSGKMKKV 597
           +PY   + +D S         + +L  VSLE+T   ++     E+  C RL L       
Sbjct: 634 IPYVRPNIVDSSIAQEKHGQSSNILDIVSLEDTPNFEEIRRTLENNHCARLYLKQARHPC 693

Query: 598 KEGSDEYKF 624
            E  D+ KF
Sbjct: 694 LEAQDDVKF 702


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 DCDWKHDRRGHQRSWQSRD 228
           D  WKHD+  +++ +Q RD
Sbjct: 64  DNSWKHDKYSYEKRYQERD 82


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 508 EETKFCDQNNYDPEDPRCTRLMLSGKMKKVKEGSDEYKFAK 630
           EE +  + +NYD  + +    +   +  +  EGSD+Y +AK
Sbjct: 285 EEKEKPEISNYDETEGKVNFSLEDSESLEFDEGSDDYDYAK 325


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 220 SRDSANEITSRRRSDPPDHTKLIAMARYVLHSADWASLATISNL 351
           SRDS  E   + +  PPD+T  ++ +      A   S  +I +L
Sbjct: 66  SRDSMKESYDKNKGTPPDYTSYVSHSDAEPEQASSKSSTSIEDL 109


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +1

Query: 451 DFSARDLTKNSRATVLVSLEETKFCDQNNYDPEDPRCTRLMLSGKMKKVKEGSDEYKFAK 630
           DF  + L K   +    S+ E + C +  YD ++P     + +  +    +G  +Y+   
Sbjct: 415 DFPYKHLRKGEYSRFPYSVLEIRECVR--YDEDEPLWISELRNSHLISEIDGFSKYEHGV 472

Query: 631 AALFERHPAM 660
           A LFE++ ++
Sbjct: 473 AILFEKYVSL 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,130
Number of Sequences: 5004
Number of extensions: 63401
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)