Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26o19
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0933 - 7199375-7199402,7199497-7199614,7199705-7199783,720... 108 5e-24
01_01_1129 - 8948612-8950117,8951354-8951503 34 0.13
08_02_1259 - 25676523-25676624,25676726-25676851,25677023-256771... 31 1.2
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851... 30 1.6
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 29 3.7
11_06_0117 + 20302795-20304816 29 4.9
12_01_0784 + 7167051-7167509,7168161-7168276,7168788-7169646 28 6.5
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423... 28 6.5
>06_01_0933 -
7199375-7199402,7199497-7199614,7199705-7199783,
7200641-7200842,7200940-7200975,7201912-7202096
Length = 215
Score = 108 bits (259), Expect = 5e-24
Identities = 58/147 (39%), Positives = 83/147 (56%)
Frame = +1
Query: 268 PDHTKLIAMARYVLHSADWASLATISNLPAIEGFPFTNVKSVVDGSLANSTGVPYFYMSP 447
P T+ A AR++ W L+TIS+ + G PF NV S DG S G+PYFY++
Sbjct: 40 PAPTEAAATARWLAAQNTWGVLSTISS--DLSGAPFGNVVSYSDGVPGESHGIPYFYLTT 97
Query: 448 LDFSARDLTKNSRATVLVSLEETKFCDQNNYDPEDPRCTRLMLSGKMKKVKEGSDEYKFA 627
LD +ARD ++ R + +S C + DPE+P C +L L+GK+K + S E A
Sbjct: 98 LDPTARDALEDERTSFTLSEFPLGTCGK--IDPENPTCAKLTLTGKLKLIDPQSSEADLA 155
Query: 628 KAALFERHPAMANWPTDHDWFIAKMKI 708
K ALF +HP M WP +H + I K++I
Sbjct: 156 KEALFTKHPEMEGWPKNHHFQIFKLEI 182
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +1
Query: 511 ETKFCDQNNYDPEDPR-----CTRLMLS-GKMKKVKEGSDEYKFAKAALFERHPAMA 663
+TKFC NNY+ PR C R + G M+ V G+ K ++L RH MA
Sbjct: 177 DTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSSSLHYRHLLMA 233
>08_02_1259 -
25676523-25676624,25676726-25676851,25677023-25677134,
25677294-25677385,25677751-25677828,25677910-25677989,
25678079-25678181,25678274-25678336,25678988-25679194
Length = 320
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 298 RYVLHSADWASLATISN--LPAIEGFPFTNVKSVVDGSLANSTGVPYFYMSPLDFSARDL 471
R ++ A +A L T+ + G+PF S+VD S +S G P F +SPL R+L
Sbjct: 85 RNLMEQARFAHLCTVMSGMHHRRTGYPFG---SLVDFS-NDSMGHPIFSLSPLAIHTRNL 140
Query: 472 TKNSRATVLVSL 507
+ R T++V +
Sbjct: 141 LSDPRCTLVVQV 152
>09_04_0701 +
19583386-19583554,19584290-19584441,19585123-19585181,
19585319-19585344,19585407-19585758,19586184-19586667
Length = 413
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 190 DRRGHQRSWQSRDSANEITSRRRSDP-PDHTKLIAMARYVLHSADWASLATISNLPAIEG 366
+ RGH S I S S+P P T+ + L + + ++ + + A
Sbjct: 273 ETRGHGHGMTSHAVQQTIPSSMASNPQPPATRRVRPR--ALSITSFIAASSSAEIRAPHD 330
Query: 367 FPFTNVKSVVDGSLANSTGVP 429
FP T S +G++ N G P
Sbjct: 331 FPLTETASTTNGNIRNGVGAP 351
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 586 MKKVKEGSDEYKFAKAALFERHPAMANWPTDHDWFIAKMKIA 711
M+K+K+ DE+ F K + + N T H + K K+A
Sbjct: 5 MQKIKDIEDEWSFVKGCILQMARTQKNKATAHHLGLLKAKLA 46
>11_06_0117 + 20302795-20304816
Length = 673
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 409 ANSTGVPYFYMSPLDFSARDLTKNSRATVLVSLEETKFCDQNNYDPEDP 555
+N TGV Y SPL+F+A L ++ L+SLE + D +N + P
Sbjct: 89 SNLTGVVYVDYSPLEFNAVALVGRITSS-LLSLEHLEHLDLSNNNLTGP 136
>12_01_0784 + 7167051-7167509,7168161-7168276,7168788-7169646
Length = 477
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 115 DKMKWELIAFSLCCLNLYVDCDWKHDRRGHQRSWQSRDSA 234
D+ W L F L LY+ W++ R H R S + A
Sbjct: 423 DRFYWLLAVFELVAFFLYLYSAWRYTYRHHPRVQPSMEDA 462
>08_02_1429 +
27040293-27040523,27041618-27041739,27042290-27042392,
27042530-27042620,27042851-27043023,27043379-27043467,
27044212-27044319,27044408-27044498,27044708-27044797,
27045587-27045658,27045756-27045849,27045940-27046087,
27046961-27047222
Length = 557
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 289 AMARYVLHSADWASLATISNLPAIEGFPFTNVKSVVD 399
++ RY+ + WAS T++ L + G P T +K +++
Sbjct: 350 SLERYMHYYERWASNQTLAKLTDVFGIPETQLKFIIE 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,966,287
Number of Sequences: 37544
Number of extensions: 387500
Number of successful extensions: 928
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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