Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o18
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    31   0.13 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.4  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   6.4  

>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 477 NYTYHITSSSVQRGLFFKMLLDYLLMFINI 388
           NY +HIT S++  GL   ++L +LL ++ I
Sbjct: 107 NYYHHITPSAISSGLLVSLVLIFLLAYLRI 136


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 504 ICYKFCCISNYTYHITSSSVQRGLFFKMLLDYLL 403
           I  +F  +   TY  TSS+  R L F   +D+LL
Sbjct: 526 IVAQFVTLCTQTYDQTSSTANRYLIFYACVDFLL 559


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 24  LLIVRNSTNSNPVNHSFQLKLCTPNFLGTWQ 116
           ++ +R + + NP  H FQ+ +  P F+  ++
Sbjct: 83  IMELRQTKDPNPYPHKFQVTITLPEFIAKYE 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,050
Number of Sequences: 5004
Number of extensions: 63569
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)