Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o18
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    31   0.95 
08_01_0701 + 6200351-6200470,6200879-6201104,6201502-6201747,620...    29   5.1  

>09_06_0076 +
           20710482-20710670,20711313-20711547,20711664-20711689,
           20712000-20712293,20712603-20712728,20712827-20712896,
           20712992-20713182,20713394-20713519,20713878-20714279,
           20714364-20714758,20714861-20715315,20715403-20715524,
           20715653-20715693,20716026-20716129,20716363-20716576,
           20717667-20717780,20718576-20718612
          Length = 1046

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 495 YNRFFSAYMKTLKKITSVDLF*KIKIAPVNKTRCTSNSPF 614
           YN+F+ A+ K LK     D   + KIA +   +   NSPF
Sbjct: 655 YNKFYKAFSKNLKLGIHEDSTNRTKIAELLSKKAVENSPF 694


>08_01_0701 +
           6200351-6200470,6200879-6201104,6201502-6201747,
           6201818-6201868,6202231-6202491,6202587-6202639,
           6202705-6202819,6202985-6203239,6203773-6204827
          Length = 793

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 498 YKFCCISNYTYHITSSSVQRGLFFKMLLDYLLMFINIKSIM 376
           + F C++ Y Y           F KMLLD LL+F+ ++S+M
Sbjct: 610 HMFRCVARYGYKDIHKRDDD--FEKMLLDRLLLFVRLESMM 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,403,676
Number of Sequences: 37544
Number of extensions: 328752
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)