Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o16
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   4.9  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    25   6.5  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   8.6  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 458 DRKHIMLENHSDTESISTELARRTSFNISNNY 363
           +RK   LEN +DT+S+  E     S    N Y
Sbjct: 118 NRKSAQLENETDTKSLPVEANNDNSARKKNEY 149


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 474 NASEVRQETYNVRKSLGYRK 415
           NA +V +  YN R  LGY+K
Sbjct: 89  NAQDVVRSHYNARPDLGYKK 108


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 122 NQSNYLNFFFYFWIIKF 72
           N  + L+FFF FW++ F
Sbjct: 70  NSFSNLHFFFLFWLLNF 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,337
Number of Sequences: 5004
Number of extensions: 32265
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)