Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o16
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.4  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = -1

Query: 465 EVRQETYNVRKSLGYRKYKHRTSETNKFQYFK*LPF*PNLIY------FHNNKIEQSCHN 304
           E  Q++Y   +   YRKY   + E ++ +  +     P +I        HNN    + +N
Sbjct: 266 EREQKSYKNERE--YRKYGKTSKERSRDRMERERSKEPKIISSLSNKTIHNNNNYNNYNN 323

Query: 303 MKLVININ 280
            KL  NIN
Sbjct: 324 KKLYYNIN 331


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 409 LILSVSE*FSNIICFLSDLTCIYCL 483
           L+    E F  I+CF+S L  ++C+
Sbjct: 410 LLRKRKELFIAIVCFVSYLIGLFCI 434


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 409 LILSVSE*FSNIICFLSDLTCIYCL 483
           L+    E F  I+CF+S L  ++C+
Sbjct: 463 LLRKRKELFIAIVCFVSYLIGLFCI 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,391
Number of Sequences: 438
Number of extensions: 2263
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)