Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o10
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    26   1.7  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   1.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   3.9  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    24   6.9  
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   6.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   6.9  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    24   6.9  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    24   9.1  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 161 TLWTKVYTGYDPKVKELAINTL 226
           +LW KVYTG  PK  E A++ L
Sbjct: 774 SLWDKVYTG-TPKESEAALDVL 794


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 151 HSVQGFLIVRKSIDQSKIH*DKSQQNDINFTDHFH 47
           H +QG++  R   DQ  ++  +    D+NF D  H
Sbjct: 161 HEIQGYMPGRLEFDQEYMNEAELPIKDMNFDDDLH 195


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 240 SPVFLNVLIANSFTLGSYPVYTFVQ----RVFNTIPSRVFLS 127
           S VF+N++I+ S T G Y V + +      +F +    +FLS
Sbjct: 659 SNVFINIVISLSSTYGMYLVVSIISFDPWHMFTSFVQYIFLS 700


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 125  YDKKTLDGMVLKTLWTKVYTGYDPKVKEL 211
            Y+K  L+   ++ +  +++ GY+P+ KEL
Sbjct: 1050 YEKYILEHCGIRIIEAELFHGYNPEKKEL 1078


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -2

Query: 151 HSVQGFLIVRKSID--QSKIH*DKSQQNDINFTD 56
           HS++GFLI+ + ID  QS  +    ++ ++ FT+
Sbjct: 206 HSMEGFLIIIQLIDWWQSNNYESHLKKGEVAFTE 239


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   ESNIQKYSALTYCKIYENGP*SLYHSVDFYP 93
           +S   KY+ALT    Y+ GP S+  S D+ P
Sbjct: 221 DSESGKYNALTITNSYDAGPSSV--STDYRP 249


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
 Frame = +2

Query: 92  LMDLALVNALTYDKKTLDGMVLKTLWTKVYTGYDPKVKELAINTLRKTGDYDKLIVH--- 262
           ++ L +++     K+TL  MV K++  K+       ++   +  L K+  +DKL+     
Sbjct: 594 VIKLLIMSYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEV 653

Query: 263 LMKVKKEKVQKILNLL--SEII 322
            ++ +KE  Q + +LL  SEI+
Sbjct: 654 TVQRRKECEQMVESLLQASEIV 675


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 376 FFFKKYWYFIRKSIHVCNDNFRQQI*Y 296
           F    Y  FI   IH C D  RQ + Y
Sbjct: 522 FVVSPYPLFISLEIHCCPDQQRQMVSY 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,166
Number of Sequences: 5004
Number of extensions: 25928
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)