Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o10
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    27   3.7  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    27   6.5  
02_02_0328 - 9004670-9004753,9004873-9004947,9005031-9005132,900...    27   6.5  
06_03_1219 - 28491185-28494415                                         26   8.6  

>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 211  QLLHFRIVSCIYFCPESF*HHSVQGFLIVRKSIDQSKIH*D 89
            Q L  +++ C++  P SF   +  G ++ R S+DQS +  D
Sbjct: 1014 QKLFVKMLRCVFRAPMSFFDTTPSGRILNRVSVDQSVVDLD 1054


>03_02_0859 - 11853928-11854138,11854225-11854683,11854760-11854991,
            11855064-11855187,11855276-11855960,11856429-11856735,
            11856832-11858188
          Length = 1124

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 56   VRKVYIILLTFILMDLAL--VNALTYDKKTLDGMVLKTLWT 172
            +R    ++L  I   LA+  +  L Y K T+DG  L  LWT
Sbjct: 965  LRLFIFVMLDSIWQSLAVFFIPYLAYRKSTIDGASLGDLWT 1005


>02_02_0328 -
           9004670-9004753,9004873-9004947,9005031-9005132,
           9005681-9005761,9006233-9006535
          Length = 214

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 68  YIILLTFILMDLALVNALTYDKKTLDGMVLKTLWTKVYTGYDPKVKELAINTL-RKTGDY 244
           YI++    +    L  A   D+  L+ ++L +   K Y G  P V   A++ +  + G  
Sbjct: 107 YIVMPGRYIYTQRLKGANVNDQIILNKVLLVSTRDKAYIGM-PVVTNAAVHAVVEEQGRD 165

Query: 245 DKLIVHLMKVKKEKVQKI 298
           DK+IV   K KK+  +K+
Sbjct: 166 DKVIVFKYKKKKKYQRKL 183


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 106 FGQCSYVR*ENPGRNGVKNSLDKSIYRIRS 195
           FG CS +R  + GRN +   L   I+ ++S
Sbjct: 221 FGNCSQLRVLSAGRNNLTGELPGDIFDVKS 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,666
Number of Sequences: 37544
Number of extensions: 137201
Number of successful extensions: 312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)