Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o08
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.8  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   8.6  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   8.6  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   8.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.6  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +2

Query: 341  ANMLDLWRIKYKTKDDRFLELKVKKSIIHWQFN 439
            +++LD+ ++ Y TK+D  ++LK++  I  + F+
Sbjct: 4656 SSILDIKKVYYDTKEDGTMDLKIQPYIDEFAFD 4688


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +2

Query: 431 QFNRIDFQNNIGLFLHENVTSIIPYDVTTISPISPDVRDHGHEQMFLINWDVIFNNKSEK 610
           QFN +D Q++I    + +  +I+   VT  + I  D     HE + + N D   NN+SE 
Sbjct: 332 QFN-VDEQSSISHSSNAS-ENIVDGAVTQANGIESDFTRVDHEPIIVNNDDENGNNESEN 389

Query: 611 RNVTAVYLVTSEKCLDHVSQII-DEKR 688
             V     +      +  +Q++ DE+R
Sbjct: 390 EEVIEEDNLNRNVIAEAQNQVVADEER 416


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 289 LNPQQYYIAHDFVRILVQINETNRIIRFVSME 194
           LNP        FVR + ++ +T R++R++  E
Sbjct: 15  LNPDVVAFQRSFVREIRRLTDTERLLRYLHSE 46


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +2

Query: 227 FIYLNKNPHKIMCNVIL-LRVQWSVAPAHCASIRSDPDLANMLDLW-RIKYKTKDDRFLE 400
           F+  N    ++  +V+L + V  S  P      R D D AN   ++ R+  K  D R+L 
Sbjct: 165 FLLQNDPSSEVRRSVLLNIEVSNSTLPFILERAR-DVDAANRKCVYARVLPKIGDFRYLS 223

Query: 401 LKVKKSIIHWQFNRID 448
           +K +  I+ W  N  D
Sbjct: 224 IKKRVRILKWGLNDRD 239


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 742 VIKLIANTMSRLCTKFILSFFVDYL*NMIQTFFRCHEVYS 623
           +I   ++ + +L T F+LSFFV  L      F  C  V S
Sbjct: 338 IIASFSSLLKKLLTLFVLSFFVYPLVQEFCLFLACSFVVS 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,950
Number of Sequences: 5004
Number of extensions: 64123
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)