Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o06
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    27   2.2  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   3.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.8  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   6.6  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   6.6  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   8.8  

>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +1

Query: 325 VLSNYEKVPEIQMAG-----AQCTGAFEGQRTEPVTGSPDHAAVKT 447
           V+  YEK+ E+Q  G     A    A +  R   V+GS D A++ T
Sbjct: 173 VIERYEKLDELQNKGEENRDASENSAVKASRNSTVSGSEDSASITT 218


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 597 INFPIAFMNDNIMWKGPKLIKKFFEFI 677
           + F +   ND+++W+GPK      +FI
Sbjct: 90  LGFLLTSKNDSVVWRGPKKAAMIRQFI 116


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 275  HPRNRTSTNEKFDTLLGCYSKR---IVYGHHTSMYCR*F*SYCRRLAPF 138
            HP   +  NE++D LLG    +     YG H S       SY  RL PF
Sbjct: 1984 HPERESQFNERYDLLLGLNDSQQQPFHYGTHYSS-AMIVCSYLIRLRPF 2031


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 495 FLHRLKCFPLKNELIEPLAKISLS 566
           FL+ +K  PLK   IEPL+  +LS
Sbjct: 404 FLNSIKHLPLKRATIEPLSDQALS 427


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 332 LSTPSRRAAQYLEPNLP*LHPRNRTSTNEKFDTLLGCYSKRIVYGHHTSMYCR*F 168
           L T   R A++ E         N+ +T+E+F T LG  S  I+  +H S+  + F
Sbjct: 259 LRTFPLRIAKHSENGFLVAQHLNKLATDEQFATSLGIDSSLILEVYHNSLQTKEF 313


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 631 MLSFMKAIGKFISGSGLTNILIDSEILASGSISSF 527
           + S+  A+ +FIS   L+  + DS++ AS   +S+
Sbjct: 17  LFSWADALTRFISADSLSTCMTDSQLSASKLYASY 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,541
Number of Sequences: 5004
Number of extensions: 67072
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)