Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o06
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771...    34   0.11 
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850...    32   0.56 
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    31   0.74 
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   3.0  
03_04_0117 + 17411064-17411955,17412111-17413543                       28   6.9  
12_01_0248 - 1841454-1841820,1842223-1842728                           28   9.2  

>01_01_0977 -
           7717808-7717837,7718227-7718327,7718449-7718548,
           7718706-7718822,7718913-7718990,7719980-7720058,
           7720184-7720249,7720373-7720441,7720890-7721188
          Length = 312

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 138 LIENNFY*NWGFLNLLFRYQNKKLYSHLKLPNFL 37
           LI   F+  W FLN++F   NKK+Y++   P F+
Sbjct: 114 LITGFFFFMWYFLNVIFNILNKKIYNYFPYPYFV 147


>05_03_0110 +
           8500204-8500460,8502544-8502612,8502725-8502790,
           8502885-8502963,8504270-8504390,8504486-8504581,
           8505403-8505515,8505612-8505689,8507777-8507893,
           8508194-8508293,8508463-8508563,8509093-8509110
          Length = 404

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 138 LIENNFY*NWGFLNLLFRYQNKKLYSHLKLPNFL 37
           L+   F+  W FLN++F   NKK++ +   P F+
Sbjct: 100 LVTGFFFFMWYFLNVIFNILNKKIFDYFPYPYFV 133


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -2

Query: 522 VENTLIDAEKFILYSLLLCRIYIWKGFYSSMIRTSCDW-FSPLTFKCSCALCTCHLNFRN 346
           V   LI    ++     LC    W       +  S  W F P T   +C LCT  LN   
Sbjct: 260 VRLNLISMMYYVSPCSALCLFIPWLFLEKPKMDESASWNFPPFTLFLNC-LCTFILNMSV 318

Query: 345 FLIIAKHSQQTS 310
           FL+I++ S  T+
Sbjct: 319 FLVISRTSALTA 330


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 422  LPVTGSVL*PSNAPVHCAPAI*ISGTFS*LLSTPSRRAAQYLEPNLP*LHPRNRTSTNEK 243
            +P+  S L   N P    PA  +S   +  +    +++A  LE +L  +HP + + T  +
Sbjct: 1796 VPLVQSSLSSQNPPAEAEPASTLSRETARDVQPERQQSASVLETSLQRMHPDDDSQTKHQ 1855

Query: 242  FDTLL 228
             +T+L
Sbjct: 1856 LETVL 1860


>03_04_0117 + 17411064-17411955,17412111-17413543
          Length = 774

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 28/108 (25%), Positives = 44/108 (40%)
 Frame = -1

Query: 667 KNFFINFGPFHIMLSFMKAIGKFISGSGLTNILIDSEILASGSISSFLSGKHFNRCRKIH 488
           +NF    G  H M+S+ K     + G G  N+    E+    S+SSF       R  +  
Sbjct: 476 QNFISLMGDQHTMISYDKVRRLSLHGHGAYNLSTSLELSHIRSLSSFGDMPRALRFDRAR 535

Query: 487 PLLSLALQNLHLERFLQQHDQDFL*LVQSFDLQMLLCIVHLPFEFQEL 344
            L  L L++    R  Q H    L  ++   L+    I  LP + ++L
Sbjct: 536 LLRVLDLESCEFLRNRQHHHICALFHLKYLSLRRAHNIDRLPRKIKKL 583


>12_01_0248 - 1841454-1841820,1842223-1842728
          Length = 290

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 248 RLLMFDFAGEAMGDSVQDTEQLVCWECLAIMRKFLKFKWQVHNAQEH 388
           RLLM     +++ DSV D+   V + C    RKF    W ++ A  H
Sbjct: 137 RLLMTHIPSQSLPDSVADSGCKVVYLCRDPNRKFR--PWDINEAHRH 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,585,093
Number of Sequences: 37544
Number of extensions: 374026
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)