Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o05
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   2.4  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   3.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    24   5.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    24   7.3  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 156 LNLPTRKMKVSTASSTALASWIVV 85
           LNLP +K + S+ SS  L++W  +
Sbjct: 141 LNLPDKKSRPSSQSSIFLSNWSTI 164


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 189 DSIDKSSFTLFLNLPTRKMKVSTASSTALASWIVVHCYLLHHLHQKNNSIFQMYLQR 19
           DS+  +   +F NL  ++  VST   T    W     ++ H + Q+ N + Q  L++
Sbjct: 270 DSVAYALQRVFYNLEKQREPVSTTELTRSFGWNSFDSFMQHDI-QEFNRVLQDNLEK 325


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 189 DSIDKSSFTLFLNLPTRKMKVSTASSTALASWIVVHCYLLHHLHQKNNSIFQMYLQR 19
           DSI  +    F NL      VST   T    W  +  ++ H + Q+ N + Q  L+R
Sbjct: 253 DSIAYALQRCFYNLQFMNEPVSTTELTKSFGWDSLDSFMQHDV-QEFNRVLQDNLER 308


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 132 KVSTASSTALASWIVVHCYLLHHLHQKNNSIFQMYLQRFRG 10
           KVS   S A+ + ++   +L++ + +KN+ +F     +FRG
Sbjct: 408 KVSNIRSQAMRAKLI-SLHLIYRILEKNSDLFMDPTLQFRG 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 854,088
Number of Sequences: 5004
Number of extensions: 12974
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)