Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o05
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1071 - 33876061-33877308,33877593-33877898                       30   0.40 
01_06_0263 + 28002315-28002634,28003263-28003350,28004296-280043...    27   5.0  
12_02_0556 + 20415683-20416841,20417563-20417726,20417837-204179...    26   8.7  

>02_05_1071 - 33876061-33877308,33877593-33877898
          Length = 517

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 132 KVSTASSTALASWIVVHCYLLHHLHQKNNSIFQMYLQRF 16
           K+STA+S   AS+ ++HCY+     QK  + F   LQR+
Sbjct: 142 KLSTAASKKAASFPLLHCYVTERNVQKAET-FMAELQRY 179


>01_06_0263 +
           28002315-28002634,28003263-28003350,28004296-28004377,
           28004637-28004764
          Length = 205

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 21  SANTSEKCCCSSGEDGATGSNGPLSSLP 104
           +AN  +      G DGA+GS GP   LP
Sbjct: 20  AANEEDAAGAPEGYDGASGSRGPPLRLP 47


>12_02_0556 +
           20415683-20416841,20417563-20417726,20417837-20417926,
           20427889-20429145
          Length = 889

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 135 MKVSTASSTALASWIVVHCYLLHHLHQK 52
           M    A   A A W++ +CY + HL  K
Sbjct: 351 MSFGDADDNAAAVWLLKNCYAVDHLKVK 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,277,726
Number of Sequences: 37544
Number of extensions: 77882
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)