Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o05
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   1.5  
U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...    27   4.5  
Z49968-1|CAA90258.2|  499|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U55370-7|AAA97998.2|  388|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  GTSANTSEKCCCSSGEDGATGSNGPLSSLPVLLMK 119
           G + + +++ CCSS  +   G+N  +  +PV L +
Sbjct: 34  GLALSRAKRQCCSSNSNSCCGNNNNVQCIPVCLQQ 68


>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -1

Query: 144 TRKMKVSTASSTALASWIVVHCYLLHHLHQKNNSIFQMYLQR 19
           T+K+K  +A +T+     +V+C L  H +++ + + ++ +QR
Sbjct: 278 TKKIKADSAKATSHLRSAIVYCLLAPHTNEQWDLLNRIAIQR 319


>Z49968-1|CAA90258.2|  499|Caenorhabditis elegans Hypothetical
           protein M110.1 protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = +3

Query: 39  KCC-CSSGEDGATGSNGP 89
           KCC C  G+ G TG  GP
Sbjct: 83  KCCSCQQGKPGPTGPKGP 100


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = +3

Query: 3   GIVLG------TSANTSEKCCCSSGEDGATGSNGPLSSLPVL 110
           G+VLG      TS     +   S+GED A  SNG +S +P +
Sbjct: 291 GLVLGEDDPEKTSVAPEVESVDSNGEDLAASSNGEISEIPTV 332


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = +3

Query: 3   GIVLG------TSANTSEKCCCSSGEDGATGSNGPLSSLPVL 110
           G+VLG      TS     +   S+GED A  SNG +S +P +
Sbjct: 291 GLVLGEDDPEKTSVAPEVESVDSNGEDLAASSNGEISEIPTV 332


>U55370-7|AAA97998.2|  388|Caenorhabditis elegans Hypothetical
           protein K03B4.1 protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 28  IHLKNAVVLLVKMVQQVAMDHYPACQ 105
           +HL    V++ KM+++  +D +P CQ
Sbjct: 139 VHLVGYPVVVQKMIREQLVDLFPGCQ 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,753,625
Number of Sequences: 27780
Number of extensions: 72365
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)