Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o03
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    27   1.9  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   1.9  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   2.5  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.3  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   4.3  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.7  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   7.6  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   10.0 
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   10.0 
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    25   10.0 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   10.0 

>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 124 YKENGEAEPENSEVEVF 174
           +KE GE  PENS+V+++
Sbjct: 346 FKEGGETSPENSKVKIY 362


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 434 KSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNF 553
           K+GE  +   + I   KA++ EK+      +L ++YD+ F
Sbjct: 284 KNGENGLENNSSIREIKALDVEKRYVLYESLLEQSYDNIF 323


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +2

Query: 200 VKDKTLNDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVL 379
           V  KT +    NV  E     I  ++ N A   Q       L N   RR  NKQ L + +
Sbjct: 83  VAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFDLVFNALDNLDARRHVNKQCLLASV 142

Query: 380 NILSKGTT 403
            ++  GTT
Sbjct: 143 PLIESGTT 150


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = +2

Query: 278  RNFAQKTQ--VTKRLKTLPNQIT--RRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGE 445
            +NF  K+   ++   KT P + T  RR+  K  + S   I S    +T+ P PA  +S +
Sbjct: 1203 QNFGIKSSPAISTNGKTQPKKQTANRRQSGKPNVKSAQKIES----ATRTPSPAISESRK 1258

Query: 446  EIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDN 550
            +   K TKIE       + +S+  S + +   D N
Sbjct: 1259 KPSSKDTKIETPS--REQSRSQTASPVKSEKDDGN 1291


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 281 NFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTT 403
           NF  K  V ++ +T   + T    N  F   V  +L+KGTT
Sbjct: 173 NFGLKVAVVRQTETAALKSTSSSRNTLFDRRVARVLTKGTT 213


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 361 LFVVASPCDLIWQRFQTFSHLCLLREVSLLD 269
           L V   P DL+     TF H+C + E S+ D
Sbjct: 222 LGVEGHPLDLVIDYHNTFEHICKILENSVKD 252


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +2

Query: 383 ILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNFIV 559
           +LS G T+ +   PAP  +   ++    K+      NNE+  ++ S  L    + +  V
Sbjct: 756 VLSGGKTAIKLIPPAPGAAKAAVMFTPPKVHYFTCENNEELHRWSSAFLKATVERDMSV 814


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +2

Query: 248 TKKKGI-YVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEP 424
           TKK  I + E R  AQ ++ T  +K    Q  ++   K   S+V    +        P+P
Sbjct: 217 TKKDLIDFSETRPLAQASRATPDIK---EQHAKKPKRKHTRSTVP---TSNVEPVSQPQP 270

Query: 425 APDKSGEEIIPKTTKIERAKAMNNEKKS 508
           +PDK      P + K E+ K   +   S
Sbjct: 271 SPDKIVSSPNPPSAKREKKKRRKSSMSS 298


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 290 QKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAP 430
           QKT  +K+L TLP Q + +  N++     L+       ++ +P P P
Sbjct: 172 QKTFASKQLPTLPLQKSSKLSNRR---PALHSFHSAPANSLYPLPTP 215


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 27/109 (24%), Positives = 47/109 (43%)
 Frame = +2

Query: 218 NDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKG 397
           N + LN L E KK+    EKR  + +    K L+   N+ T+R+         L +  K 
Sbjct: 16  NLNFLNELIEEKKR-YEDEKRKISHQKYTDKLLEANDNETTKRK---------LLVKQKR 65

Query: 398 TTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYD 544
            ++ +F      K  +E    T K E+A      ++S+ + +   + YD
Sbjct: 66  KSNKEFQSNIIKKRKDEERKGTLKTEQANEEELLQRSRLELERKAKKYD 114


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 20/93 (21%), Positives = 41/93 (44%)
 Frame = +2

Query: 254  KKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPD 433
            +K I VE+ N ++   V +RL +L NQ+T   +  +FL +    + +   + Q       
Sbjct: 885  EKDILVERAN-SRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLS 943

Query: 434  KSGEEIIPKTTKIERAKAMNNEKKSKFKSKILN 532
                 +  K + I++ +   + K  + +   LN
Sbjct: 944  DLSSTLEKKLSSIKKDEQTISSKYKELEKDYLN 976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,651
Number of Sequences: 5004
Number of extensions: 42057
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)