Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o02
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    70   3e-13
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    29   0.63 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   2.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   4.5  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    26   4.5  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   7.8  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   7.8  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 35/86 (40%), Positives = 46/86 (53%)
 Frame = +1

Query: 235 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHMAHDVMRX 414
           PP++I HGLLGSK NW S++K       R + ++D R HGDS      +Y  MA D  + 
Sbjct: 21  PPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPCVAPLSYSAMALDAFQF 80

Query: 415 XXXXXXXXXXXXGHSMGGRTAMVLSL 492
                       GHSMG +TAMV +L
Sbjct: 81  MKDHKLDKASIIGHSMGAKTAMVTAL 106



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = +3

Query: 525 DINLRNFLITNLVQ--TNAGSFTWRVNIPALKDNFQNHISSFPSNLKGLQYCGPTL 686
           DI +R+FL++NL +   N+ +F +RV I  +  + +  I  FP++L  L Y  PTL
Sbjct: 162 DILVRSFLLSNLKKDSNNSNTFKFRVPIELISKSLKT-IEGFPASLNDLVYDSPTL 216


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 544 KFLRFISGVN-DLSWSYIAVIAPWQFGLPYCAQAVIPLTTLISLAAALHHE 395
           K L++ S  N +L  ++  +IAP  FG PY  QA     T I+L  A   E
Sbjct: 92  KVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDE 142


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 615 DNFQNHISSFPSNLKGLQYCGPTL 686
           D F N  S FPS+L G+    P L
Sbjct: 200 DEFNNSSSGFPSSLNGIPIASPPL 223


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 477  HGAITAMYDQLKSFTPDINLRNFLITNLVQTNAGSFTWRVNIPA 608
            +G ++  +D+L S    +NL +  I  L+Q N     W V  PA
Sbjct: 1409 NGVLSKAWDELSSAGSSVNLYSEEIILLIQKNLIVTKWDVKRPA 1452


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 102 FQ*FHKITQCQCPKMLEFYSIERRNSRFGLRFLREHFGL*KFITTSSSH 248
           FQ F+     + PK+ + + IE   +    R+  E FG  K I   S H
Sbjct: 93  FQSFYDQVYIETPKLHQVFGIEHNAAMEAGRYFYESFGNRKRIDYGSGH 141


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = -3

Query: 622 KLSFRAGILTLQVKDPALVCTKLVIRKFLRFISGVNDLSWSYIAVIAPWQFGLPYCAQAV 443
           K  F   ++ +++KD  +  T L++RKF       +D    Y  ++  W   + Y   ++
Sbjct: 647 KEEFLYDLIQIRLKDDNVFPTLLLLRKF----DWKDDYQILYNTIMEVW--NIKY--NSL 698

Query: 442 IPLTTLISLAAALHHEPCVHM 380
             L  L+S     H E C+H+
Sbjct: 699 NALARLLSALYKFHPEFCIHV 719


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +1

Query: 235 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNH 351
           P  +  HGL+GS+N ++S+   I  + G  V++++ R++
Sbjct: 117 PVFIFSHGLVGSRNVYSSLCGTI-ASYGIVVLAMEHRDN 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,129
Number of Sequences: 5004
Number of extensions: 50588
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)