Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26o02
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81105-4|CAB03219.1|  299|Caenorhabditis elegans Hypothetical pr...    77   2e-14
Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical pr...    52   5e-07
Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical pr...    36   0.036
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    28   5.5  

>Z81105-4|CAB03219.1|  299|Caenorhabditis elegans Hypothetical
           protein R05D7.4 protein.
          Length = 299

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
 Frame = +1

Query: 238 PLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHMAHDVM--- 408
           PLVI+HGL G K NWNS+ KA+H+     V +VD RNHG S H+   +Y  MA D++   
Sbjct: 47  PLVIVHGLFGQKQNWNSVGKALHKKLEAPVYAVDVRNHGSSPHTETMSYTEMAEDLVLFI 106

Query: 409 -RXXXXXXXXXXXXXGHSMGGRTAMVLSL 492
            +             GHSMGG+  M L++
Sbjct: 107 DKVKEETKKTRVNLLGHSMGGKIVMRLAI 135



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 507 LKSFTPDINLRNFLITNLVQT--NAGSFTWRVNIPALKDNFQNHISSFPSNLKGLQYCGP 680
           L+S  PD+ +R F++TNL  +  N G   W++NI  + D+  + I  +   L    + GP
Sbjct: 186 LESAIPDLAMRQFILTNLQPSSENEGQMEWKININTI-DSHVDEILGY--TLPVGSFRGP 242

Query: 681 TLF 689
           TLF
Sbjct: 243 TLF 245


>Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical
           protein F32B4.6 protein.
          Length = 297

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = +1

Query: 238 PLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHMAHDVMR-- 411
           PL+++ GL G+K NW  + K + +  G  V +V+ RNHG    +   TY  MA D++   
Sbjct: 37  PLILVPGLFGTKENWIQVGKDLSQRLGCMVFAVENRNHGSFSKAASMTYEEMADDLVGFI 96

Query: 412 --XXXXXXXXXXXXXGHSMGGRTAMVLS 489
                          GHSMGG+    L+
Sbjct: 97  DWVRKITGEDKVNLHGHSMGGKAVTQLA 124


>Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical
           protein B0464.9 protein.
          Length = 364

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +1

Query: 235 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQH-----TYVHMAH 399
           P   +LHG   S   W   +K +      +V++ D R HGD++ S +H     T +    
Sbjct: 85  PIFYLLHGGGYSGLTWACFAKELATLISCRVVAPDLRGHGDTKCSDEHDLSKETQIKDIG 144

Query: 400 DVMRXXXXXXXXXXXXXGHSMGGRTAM 480
            + +             GHSMGG  A+
Sbjct: 145 AIFKNIFGEDDSPVCIVGHSMGGALAI 171


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 529  ISGVNDLSWSYIAVIAPWQFGLPYCAQAVIPLTTLISLAAALHHEPCVHMCAGVNV 362
            +S + +LS S +A++  +   +  C +A   +TT++S  + L  +P    C G  V
Sbjct: 1259 VSRMIELSNSIVALMNLYNSSVAICLEAGRSITTILSSLSQLLSDPYYRTCDGFQV 1314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,131
Number of Sequences: 27780
Number of extensions: 275577
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)