Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n22
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   157   1e-39
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   119   4e-28
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   113   2e-26
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    33   0.037
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    30   0.26 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.9  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   5.7  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  157 bits (381), Expect = 1e-39
 Identities = 75/94 (79%), Positives = 87/94 (92%)
 Frame = +3

Query: 159 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 338
           LQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPR
Sbjct: 64  LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPR 123

Query: 339 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 440
           HLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 124 HLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  119 bits (286), Expect = 4e-28
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
 Frame = +3

Query: 159 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 338
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PR
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPR 83

Query: 339 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 467
           HLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 84  HLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  113 bits (273), Expect = 2e-26
 Identities = 60/100 (60%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
 Frame = +3

Query: 159 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 338
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PR
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPR 83

Query: 339 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 455
           HLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 84  HLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +3

Query: 162 QFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 341
           +FPV RI + +       G+V     V  +  LE     +++ +   ++  + KR+T  H
Sbjct: 23  RFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81

Query: 342 LQLAIRGDEELDSL 383
           L+ A++  E+ D L
Sbjct: 82  LKHAVQSVEQFDFL 95


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 251 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 355
           +Y G +YS G  V GKCV +F +  +     +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 364 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRPWLVVLFLRC 188
           SPL   CKC G IR+  +  L  +  +SK +     K   E T   + + P  +   + C
Sbjct: 19  SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMPRTIPFTILC 78


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 303 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 407
           +K+L + K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 69  NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,863
Number of Sequences: 5004
Number of extensions: 54012
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)