Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26n19
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 33 0.039
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 33 0.039
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 31 0.16
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 29 0.48
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 29 0.48
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 29 0.83
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 28 1.5
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 2.5
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 2.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 2.5
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 3.4
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 4.4
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 5.9
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 7.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 7.8
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.8
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 33.1 bits (72), Expect = 0.039
Identities = 28/97 (28%), Positives = 43/97 (44%)
Frame = +3
Query: 288 KDDLEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVNHNVRTRLD 467
+D+ E+ E Y ++ + + D ++RLEK+DE K + E L + NV L
Sbjct: 104 RDEAEQKAEI--YNRDALNTKQEHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELV 161
Query: 468 EIKRRELERLRHLATKQFELTNDLHVNMGKVPSSEHL 578
E R E++ L Q E + V SSE L
Sbjct: 162 E-SRDEIKELIEKQKVQKESVKSHESELSSVMSSEIL 197
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 33.1 bits (72), Expect = 0.039
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Frame = +3
Query: 264 DKSEDSEIKDDLEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVN 443
D+SE + +K L +Y + +K LE E++++ + E E L+ +
Sbjct: 843 DESELNSVKRSLLKYENKLQIIKSSSSGLE------EQMQRINSEISDKRNELESLEELQ 896
Query: 444 HNVRTRLDE---IKRRELERLRHLATKQFELTNDLHVNMGKVPSSEHLDHTNAHTFEIED 614
H V TR+++ I R + L ++ E N+ ++G +P + + + + I
Sbjct: 897 HEVATRIEQDAKINERNAAKRSLLLARKKE-CNEKIKSLGVLPEEAFIKYVSTSSNAIVK 955
Query: 615 LKKLIMKTTSDLEAADKKRREEF 683
I + D + +KK E+F
Sbjct: 956 KLHKINEALKDYGSVNKKAYEQF 978
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 31.1 bits (67), Expect = 0.16
Identities = 23/100 (23%), Positives = 47/100 (47%)
Frame = +3
Query: 267 KSEDSEIKDDLEEYMEYHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVNH 446
+S S +++ L EY E + ++A+E RL K DEE + K A+
Sbjct: 1001 ESMASVLQEKLREYSEELDQMSPNLRAIERLETVETRLAKLDEEFAAARKAAK------- 1053
Query: 447 NVRTRLDEIKRRELERLRHLATKQFELTNDLHVNMGKVPS 566
N + R + +K++ L++ + + E + ++ + K P+
Sbjct: 1054 NAKERFNAVKQKRLQKFQAAFSHISEQIDPIYKELTKSPA 1093
Score = 29.1 bits (62), Expect = 0.63
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 474 KRRELERLRHLATKQFELTNDLHVNMGKVP-----SSEHLDHTNAHTFEIEDLKKLIMKT 638
++R+ +L +L K F L + NM +V S + ++ + +T EIE LK+
Sbjct: 224 EKRDSAQLVYLLWKLFHLEKSISSNMAEVTRLKADSIQLIERRDENTKEIEKLKEKEGSI 283
Query: 639 TSDLEAADKKRREEFK 686
+L A D+K R++ K
Sbjct: 284 RRNLLAFDRKVRKQEK 299
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 277 TVKLRMIWRSIWSIIGTSRRLCKHWRVILISGSD*RKLMKKMLNLEKSQNSWTLSTTM*G 456
T L +I +W+I+G R +W++++ GS + + L + + QN TM
Sbjct: 163 TFILMLIILIVWAIVGGIYRAPDNWQIVMQDGSSIQCYVSDTLLMRQQQNQHIQVLTMIS 222
Query: 457 Q 459
Q
Sbjct: 223 Q 223
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 29.5 bits (63), Expect = 0.48
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Frame = +3
Query: 336 VVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVNHNVRTRLDEIKRRELERLRHLATK 515
V ++L+ R ++E+ D+E ++ ++ ++L + E +++ +RHL ++
Sbjct: 225 VHESLKRISCIRSKVEELDQEITETARLQDEL--------FKSTEEYEQQMITIRHLESQ 276
Query: 516 QFELT---NDLHVNMGKVP-SSEHLD--HTN--AHTFEIEDLKKLIMKTTSDLEAADKKR 671
+ NDL M SSE L+ H+N E ++L K + K SDLE+ K R
Sbjct: 277 SDIINTTINDLKSQMTITDESSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSR 336
Query: 672 RE 677
RE
Sbjct: 337 RE 338
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 28.7 bits (61), Expect = 0.83
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 315 YHRYLKEVVQALESDPDFRERLEKADEEDVKSGKIAEQLDFVNHNVRTRLDEI-KRRELE 491
+ R K V +A+ S P+ E++EK+ + V GKI ++ V H V + L I KR+ E
Sbjct: 431 FKRDAKAVEEAMISWPE-SEKVEKSAQL-VAEGKIIVNVNGVEHTVESDLVTIEKRKHTE 488
Query: 492 RLR 500
+R
Sbjct: 489 HIR 491
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 283 KLRMIWRSIWSIIGT 327
++RM W SIWS++GT
Sbjct: 1207 RIRMEWSSIWSLLGT 1221
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 128 SNENCHYLHVDLVVLAKLTHQYEALS-YNRLYDRFP 232
S E CHYLH+ K+ EAL YNR P
Sbjct: 825 SVEYCHYLHLAAEEALKIGANQEALDLYNRCIKMIP 860
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 264 DKSEDSEIKDDLEEYMEYHRYLKEVVQALESDPDFRERLEKADEE 398
+ ++DS + EE Y K++ E DP+F + LE+ D++
Sbjct: 102 ENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQD 146
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +3
Query: 438 VNHNVRTRLDEIKRRELERLRHLATKQFELTNDLHVNMGKVPSSEHLDHTNAHTFEIEDL 617
+N +R +RR L+++ L + +F TNDL+ P D +N ++ +E L
Sbjct: 1712 INTILRRNNSRGRRRMLQQMSPLKSNKFSGTNDLNFQQATKP-----DGSNKSSY-MERL 1765
Query: 618 KKLIMKTTSDLEAADKKR 671
+KL + L++ K+
Sbjct: 1766 EKLKQNSERHLQSVGGKK 1783
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 465 DEIKRRELE-RLRHLATKQFELTNDLHVNMGKVPSSEHLDHTNAHTFEIEDLKKLIMKTT 641
+E + ELE ++ L ++Q+E+ N +V+ + TNA IED K+ + K
Sbjct: 25 EENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVEKPV 84
Query: 642 S 644
S
Sbjct: 85 S 85
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Frame = +3
Query: 510 TKQFELTNDLHVNMGK-----VPSSEHLDHTNAHT---FEIEDLKKLIMKT 638
T+ F +D +N GK +P HT++ T F IEDLK+L+ +T
Sbjct: 188 TEVFCEVHDAELNDGKDCVHAIPHGLTYSHTDSSTYKVFPIEDLKRLVYET 238
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 579 DHTNAHTFEIEDLKKLIMKT-TSDLEAADKKRREEFK 686
DHT+ H F++++LK L + + ++ A + R+ +++
Sbjct: 113 DHTDLHDFDVKNLKSLSLPSHVAEDRTAQQYRQNKYQ 149
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +3
Query: 465 DEIKRRELERLRHLATKQFELTNDLHVNMGKVPSSEHLDHTNAHTFEIEDLKKLIMKTTS 644
DE++ R L R + +A+K ++D + + TN+ + IE+L + +TS
Sbjct: 1045 DELQSRILRRKKMMASKN---SSDSDSDSEDNFLASLTPKTNSSSISIENLPRKTKLSTS 1101
Query: 645 DLEAADKKRRE 677
L+ K+RR+
Sbjct: 1102 LLKKPSKRRRK 1112
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Frame = +3
Query: 258 TPDKSEDSEIKDDLEEYMEYHRYLKEVVQALESDPD-------FRERLEKA---DEEDVK 407
TP S + K +L++ + + ++ E D + + + L+K+ D+ D
Sbjct: 351 TPPASTSNSNKKNLDKLKKMRKLCSRSLEPYELDSNTQRKRKRYEDSLKKSKTLDKVDSL 410
Query: 408 SGKIAEQLDFVNHNVRTRLDEIKRRELERLRHL 506
+ K+A++LD N +++++KR + E L +
Sbjct: 411 NRKMAKELDRKNSKELQKINKVKRTKEECLSEI 443
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 74 YIITGQQNSTYSKIIQSISNEN 139
Y + NSTY+ +QSI+NE+
Sbjct: 184 YSLPSNSNSTYTTPLQSINNEH 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,179
Number of Sequences: 5004
Number of extensions: 48276
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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