Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26n18
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0505 + 25719959-25720052,25721548-25722266 30 2.2
02_01_0736 - 5490671-5491813 30 2.2
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 30 2.2
09_02_0020 + 3042502-3042980,3043068-3043176,3043290-3043476,304... 29 3.0
03_05_0145 + 21254448-21255488 29 3.0
03_02_0091 + 5574528-5577254 29 3.9
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 29 5.2
11_01_0611 - 4894342-4895448 29 5.2
04_04_0881 + 29055724-29059197 29 5.2
04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142... 28 6.9
11_06_0284 + 21909758-21913645 28 9.1
05_04_0293 - 19898254-19898819,19899698-19899701 28 9.1
>04_04_0505 + 25719959-25720052,25721548-25722266
Length = 270
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 278 AVPALVLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLR 418
A P R+ RR D PRPAR H +VTL H S +R
Sbjct: 79 ATPPKSYGRLLGRRRRHRDLPRPARGVDHPAVTLRGLHPSSETGDIR 125
>02_01_0736 - 5490671-5491813
Length = 380
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 599 GCSGEPTCLALPDPLCAPSQLARARGLADPAAL 697
GCS E ALPDP+C P L+ A LA P L
Sbjct: 180 GCSWE----ALPDPICFPCVLSPAGYLAPPLIL 208
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 693 AAGSARPLARAN*LGAHKGSGNARQVGSPLQPVR 592
AAGSAR L + AH GSG R++ + P R
Sbjct: 366 AAGSARELMSGSRRAAHHGSGQRRELMGTITPQR 399
>09_02_0020 +
3042502-3042980,3043068-3043176,3043290-3043476,
3043690-3043784
Length = 289
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 400 PPRNTTVLEKKVGRWKQRSGGGWLQKKG*KRKSVKEN*KP*IARW 534
PP+ + E++ G W +RS W +++G KR+ K + + I RW
Sbjct: 115 PPKQSDAGEERRGAWSRRSSEMW-ERRGEKRRGRKGSMR--IQRW 156
>03_05_0145 + 21254448-21255488
Length = 346
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 428 KKSADGNSGAEEGGSKKKDENENQLKRTKS 517
K+S +GN GA GG+ K+D E +R S
Sbjct: 218 KRSLNGNGGAYGGGAAKRDPGERSGRRPDS 247
>03_02_0091 + 5574528-5577254
Length = 908
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 122 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNKVRFA 271
+ L V AALW ++ A R VC G +S K FF + R A
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFERARDA 530
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 90 NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFDS 269
N +SL+ L HV S +PY I RLR+SAP + +A W+ + +
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRKSIHT 599
Query: 270 LP 275
+P
Sbjct: 600 VP 601
>11_01_0611 - 4894342-4895448
Length = 368
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 452 GAEE--GGSKKKDENENQLKRTKSRELRGGIMYYSC 553
G EE G ++++++ +L RT+S ELR G+ + C
Sbjct: 305 GEEETKNGKQEQEDDHVELLRTRSGELREGVEMFDC 340
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 386 CHN-GSHLATLRF*KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 532
C+N G+ LA LR S+DG EEG +K+ E+ ++K LRG
Sbjct: 867 CYNDGTVLAILRL-PSTSSDGAVVIEEGSFRKEAESLGKVKHRNLTVLRG 915
>04_04_1548 -
34313212-34313304,34313518-34313632,34314097-34314287,
34314391-34315379,34315989-34316136,34316349-34316424,
34316946-34317110,34317196-34317286,34318069-34318153,
34318256-34318411,34318479-34318586,34318713-34318811,
34318927-34319036,34319139-34319208
Length = 831
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 614 PTCLALPDPLCAPSQLARARGLADPAALSAHLQNQEGSSS 733
PT LP P PS L G +DP A S+ S +
Sbjct: 517 PTSAVLPSPTSLPSHLREKFGFSDPNANSSSFITSSSSDN 556
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 425 KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGG 535
++K + N G EE G ++ E E + ++ K ++ +GG
Sbjct: 433 ERKEEEKNEGEEENGEEEGKEKELKGRKDKEKKEKGG 469
>05_04_0293 - 19898254-19898819,19899698-19899701
Length = 189
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 107 PPFACILLQSCVLHAAL 157
PP AC +LQ C LH+ L
Sbjct: 82 PPLACAILQECELHSYL 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,700,852
Number of Sequences: 37544
Number of extensions: 439373
Number of successful extensions: 1303
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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